Variant report

Variant	rs2115952
Chromosome Location	chr14:32176616-32176617
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1954441	1.00[YRI][hapmap]
rs2120140	0.87[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934206	chr14:31887749-32257097	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv564180	chr14:31958566-32368934	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv564181	chr14:31958761-32363980	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv901591	chr14:32093548-32202677	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv901592	chr14:32093548-32267323	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv564182	chr14:32110519-32584337	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv1046526	chr14:32110537-32567426	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32148000-32183600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr14:32159000-32184800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr14:32162000-32186800	Weak transcription	Brain Hippocampus Middle	brain
4	chr14:32165000-32179600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr14:32165600-32188200	Weak transcription	Right Ventricle	heart
6	chr14:32166400-32177800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr14:32167200-32177000	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr14:32168800-32176800	Weak transcription	Left Ventricle	heart
9	chr14:32169600-32177200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr14:32169600-32181800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr14:32171000-32186400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr14:32171000-32200600	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr14:32171800-32176800	Weak transcription	A549	lung
14	chr14:32171800-32182200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr14:32172000-32186400	Weak transcription	Pancreas	Pancrea
16	chr14:32172000-32188200	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr14:32172200-32180000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr14:32173000-32183000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr14:32173200-32182200	Weak transcription	Thymus	Thymus
20	chr14:32173400-32186400	Weak transcription	Esophagus	oesophagus
21	chr14:32173400-32189800	Weak transcription	Primary B cells from cord blood	blood
22	chr14:32173400-32218000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr14:32174200-32185600	Weak transcription	HepG2	liver
24	chr14:32174400-32177800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr14:32174600-32179200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr14:32174600-32179400	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr14:32174600-32200000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr14:32175200-32181200	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr14:32175200-32186600	Weak transcription	Primary T cells from cord blood	blood
30	chr14:32175200-32186600	Weak transcription	Adipose Nuclei	Adipose
31	chr14:32175200-32187000	Weak transcription	Aorta	Aorta
32	chr14:32175400-32178800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr14:32175400-32180200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr14:32175400-32180600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr14:32175400-32180600	Weak transcription	Fetal Intestine Large	intestine
36	chr14:32175400-32180600	Weak transcription	Fetal Muscle Leg	muscle
37	chr14:32175400-32180600	Weak transcription	Lung	lung
38	chr14:32175400-32180800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr14:32175400-32181400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr14:32175400-32181400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr14:32175400-32181600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr14:32175400-32181600	Weak transcription	Spleen	Spleen
43	chr14:32175400-32182400	Weak transcription	Primary B cells from peripheral blood	blood
44	chr14:32175400-32182400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr14:32175400-32182400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr14:32175400-32183200	Weak transcription	Gastric	stomach
47	chr14:32175400-32185200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr14:32175400-32187000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr14:32175400-32193400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr14:32175400-32205600	Weak transcription	Ovary	ovary

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