Variant report

Variant	rs211622
Chromosome Location	chr6:133729715-133729716
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:133720015..133722814-chr6:133729662..133731375,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs211594	1.00[CHB][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs211598	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs211621	0.82[CEU][hapmap]
rs212785	0.85[CEU][hapmap];0.91[EUR][1000 genomes]
rs212788	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs380367	1.00[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap];0.81[YRI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025700	chr6:133726264-133748758	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv604699	chr6:133726502-133747840	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1019755	chr6:133726502-133748758	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1020698	chr6:133726502-133751161	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv525971	chr6:133726646-133753825	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133720200-133748400	Weak transcription	Hela-S3	cervix
2	chr6:133720400-133749600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:133726600-133752200	Weak transcription	Right Atrium	heart
4	chr6:133727600-133730000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:133728200-133729800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr6:133728600-133730600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr6:133728800-133730200	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr6:133728800-133732200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:133729000-133729800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:133729200-133731400	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr6:133729400-133730200	Enhancers	Psoas Muscle	Psoas
12	chr6:133729400-133731800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:133729400-133734000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr6:133729400-133736600	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr6:133729600-133731200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr6:133729600-133731400	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr6:133729600-133731600	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr6:133729600-133731800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr6:133729600-133731800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr6:133729600-133731800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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