Variant report

Variant	rs2116287
Chromosome Location	chr10:118199796-118199797
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10885937	0.97[EUR][1000 genomes]
rs7071213	0.97[EUR][1000 genomes]
rs7090296	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832001	chr10:118138370-118315059	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv948195	chr10:118198121-118199888	Strong transcription Genic enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118191600-118216200	Weak transcription	Pancreas	Pancrea
2	chr10:118199000-118202000	Genic enhancers	HMEC	breast
3	chr10:118199200-118201000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr10:118199200-118202200	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr10:118199400-118201400	Genic enhancers	NHEK	skin
6	chr10:118199600-118199800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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