Variant report

Variant	rs2116456
Chromosome Location	chr8:129807430-129807431
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:129805990..129808282-chr8:129810250..129812846,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16903626	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16903630	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16903632	1.00[JPT][hapmap]
rs16903929	1.00[EUR][1000 genomes]
rs2056312	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7009989	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:129784000-129809800	Weak transcription	Dnd41	blood
2	chr8:129805200-129807600	Enhancers	HUVEC	blood vessel
3	chr8:129805400-129808200	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr8:129805600-129807600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr8:129805600-129807800	Enhancers	Brain Germinal Matrix	brain
6	chr8:129805800-129807600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr8:129806000-129807600	Enhancers	Muscle Satellite Cultured Cells	--
8	chr8:129806000-129807600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr8:129806000-129807600	Enhancers	Liver	Liver
10	chr8:129806000-129807800	Enhancers	HSMM	muscle
11	chr8:129806000-129808200	Enhancers	Fetal Muscle Leg	muscle
12	chr8:129806000-129808600	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr8:129806200-129807600	Enhancers	Fetal Stomach	stomach
14	chr8:129806200-129807800	Enhancers	NHDF-Ad	bronchial
15	chr8:129806400-129807600	Enhancers	HSMMtube	muscle
16	chr8:129806400-129807600	Enhancers	NH-A	brain
17	chr8:129806600-129807600	Enhancers	Colon Smooth Muscle	Colon
18	chr8:129806600-129807600	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr8:129806600-129807600	Enhancers	NHLF	lung
20	chr8:129806600-129807800	Enhancers	Fetal Lung	lung
21	chr8:129806600-129807800	Enhancers	Ovary	ovary
22	chr8:129806800-129807600	Enhancers	Adipose Nuclei	Adipose
23	chr8:129806800-129807600	Enhancers	Brain Anterior Caudate	brain
24	chr8:129806800-129807600	Enhancers	Rectal Smooth Muscle	rectum
25	chr8:129806800-129807600	Enhancers	Stomach Smooth Muscle	stomach
26	chr8:129807000-129807600	Enhancers	Brain Angular Gyrus	brain
27	chr8:129807000-129812200	Weak transcription	Fetal Intestine Small	intestine
28	chr8:129807000-129820800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr8:129807200-129807800	Enhancers	Skeletal Muscle Female	skeletal muscle

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