The 2.0 version of rSNPBase

Variant report

Variant rs2116715
Chromosome Location chr5:148213506-148213507
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:63 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:148207600-148222800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr5:148209000-148214000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
3 chr5:148209400-148218400 Enhancers Primary B cells from peripheral blood blood
4 chr5:148209600-148223800 Weak transcription Aorta Aorta
5 chr5:148209800-148218000 Weak transcription Brain Angular Gyrus brain
6 chr5:148210000-148213600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
7 chr5:148210000-148223400 Weak transcription Placenta Placenta
8 chr5:148211200-148213600 Weak transcription Brain Inferior Temporal Lobe brain
9 chr5:148211400-148213600 Weak transcription Brain Anterior Caudate brain
10 chr5:148211400-148217800 Weak transcription Lung lung
11 chr5:148211400-148219600 Weak transcription Esophagus oesophagus
12 chr5:148211400-148222800 Weak transcription HSMM muscle
13 chr5:148211600-148214800 Enhancers GM12878-XiMat blood
14 chr5:148211600-148215400 Enhancers Fetal Heart heart
15 chr5:148211600-148219200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
16 chr5:148211600-148220000 Weak transcription HMEC breast
17 chr5:148211600-148222800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
18 chr5:148211600-148222800 Weak transcription Gastric stomach
19 chr5:148211600-148222800 Weak transcription HSMMtube muscle
20 chr5:148211800-148214800 Enhancers Skeletal Muscle Male skeletal muscle
21 chr5:148212200-148214600 Enhancers Brain Cingulate Gyrus brain
22 chr5:148212200-148214600 Enhancers Spleen Spleen
23 chr5:148212200-148215000 Enhancers Psoas Muscle Psoas
24 chr5:148212200-148221200 Weak transcription Duodenum Smooth Muscle Duodenum
25 chr5:148212200-148221400 Weak transcription Stomach Smooth Muscle stomach
26 chr5:148212400-148213600 Enhancers Primary T killer memory cells from peripheral blood blood
27 chr5:148212600-148214400 Enhancers Brain Hippocampus Middle brain
28 chr5:148212600-148214800 Genic enhancers NHEK skin
29 chr5:148212600-148215600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
30 chr5:148212600-148220000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
31 chr5:148212800-148214200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
32 chr5:148212800-148214800 Enhancers Primary B cells from cord blood blood
33 chr5:148212800-148214800 Enhancers Adipose Nuclei Adipose
34 chr5:148212800-148215600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
35 chr5:148212800-148215800 Weak transcription Rectal Mucosa Donor 31 rectum
36 chr5:148212800-148216400 Genic enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
37 chr5:148212800-148219600 Weak transcription Muscle Satellite Cultured Cells --
38 chr5:148213000-148213600 Genic enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
39 chr5:148213000-148214000 Genic enhancers Foreskin Fibroblast Primary Cells skin01 Skin
40 chr5:148213000-148214000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
41 chr5:148213000-148214000 Weak transcription Stomach Mucosa stomach
42 chr5:148213000-148214200 Weak transcription Primary T cells fromperipheralblood blood
43 chr5:148213000-148214200 Weak transcription Left Ventricle heart
44 chr5:148213000-148214200 Weak transcription Right Atrium heart
45 chr5:148213000-148214200 Enhancers Skeletal Muscle Female skeletal muscle
46 chr5:148213000-148215400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
47 chr5:148213000-148215600 Weak transcription Primary T helper cells PMA-I stimulated --
48 chr5:148213000-148216400 Weak transcription Sigmoid Colon Sigmoid Colon
49 chr5:148213000-148217800 Weak transcription Primary T killer naive cells fromperipheralblood blood
50 chr5:148213000-148219200 Weak transcription Liver Liver

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Last update: Aug 31, 2015