Variant report

Variant	rs2119537
Chromosome Location	chr8:87558138-87558139
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:87551519..87555405-chr8:87558017..87562987,4	MCF-7	breast:
2	chr8:87519168..87522025-chr8:87556518..87558633,2	MCF-7	breast:
3	chr8:87526686..87529594-chr8:87554156..87558749,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000085719	Chromatin interaction
ENSG00000176623	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs17609487	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17609515	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17682647	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72688597	0.93[AMR][1000 genomes]
rs72688599	0.93[AMR][1000 genomes]
rs72688600	0.93[AMR][1000 genomes]
rs72688602	0.93[AMR][1000 genomes]
rs72690405	0.93[AMR][1000 genomes]
rs72690406	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72690409	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72690411	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72690412	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72690413	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72690414	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72690415	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72690418	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72690421	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72690423	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72690424	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72690427	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72690429	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72690431	0.89[EUR][1000 genomes]
rs72690432	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72690438	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72690440	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72690441	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72690444	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72690446	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72690449	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72690456	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72690458	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72690467	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72690468	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72690469	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72690475	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72690477	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349873	chr8:87185763-87603726	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1023510	chr8:87429001-87874948	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv933966	chr8:87454655-87591558	ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:87527400-87568400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:87527600-87562000	Weak transcription	Pancreas	Pancrea
3	chr8:87527600-87568200	Weak transcription	Gastric	stomach
4	chr8:87527600-87584000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr8:87527800-87560000	Weak transcription	HSMMtube	muscle
6	chr8:87528000-87563800	Weak transcription	Hela-S3	cervix
7	chr8:87528000-87573600	Weak transcription	Stomach Mucosa	stomach
8	chr8:87528200-87572000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr8:87528400-87560400	Weak transcription	Thymus	Thymus
10	chr8:87528600-87566000	Weak transcription	Spleen	Spleen
11	chr8:87536000-87559400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr8:87539600-87560200	Weak transcription	Lung	lung
13	chr8:87541600-87563800	Strong transcription	Primary T cells fromperipheralblood	blood
14	chr8:87541600-87570600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr8:87542000-87558800	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr8:87543200-87571200	Strong transcription	Primary T helper cells fromperipheralblood	blood
17	chr8:87543200-87572600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr8:87543400-87568800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr8:87543800-87560000	Weak transcription	Esophagus	oesophagus
20	chr8:87545000-87571400	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr8:87545000-87576800	Strong transcription	Primary neutrophils fromperipheralblood	blood
22	chr8:87546400-87569400	Strong transcription	NHDF-Ad	bronchial
23	chr8:87546600-87570200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr8:87546600-87570800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr8:87547800-87563200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr8:87548400-87569400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr8:87548800-87573400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr8:87549000-87572600	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr8:87549200-87568200	Weak transcription	K562	blood
30	chr8:87549800-87566000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr8:87550600-87560400	Weak transcription	Aorta	Aorta
32	chr8:87550600-87569800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr8:87550800-87560400	Weak transcription	Fetal Stomach	stomach
34	chr8:87551000-87559400	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr8:87551200-87559400	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr8:87551200-87559600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr8:87551200-87568200	Weak transcription	Psoas Muscle	Psoas
38	chr8:87551600-87559600	Weak transcription	HepG2	liver
39	chr8:87551600-87560000	Weak transcription	Right Ventricle	heart
40	chr8:87552200-87561800	Weak transcription	Fetal Intestine Small	intestine
41	chr8:87552600-87575000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr8:87553000-87559600	Weak transcription	NH-A	brain
43	chr8:87553000-87572800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr8:87553800-87575000	Strong transcription	Primary B cells from cord blood	blood
45	chr8:87554600-87558200	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr8:87554600-87566000	Weak transcription	Fetal Heart	heart
47	chr8:87555400-87560800	Strong transcription	GM12878-XiMat	blood
48	chr8:87555600-87567600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr8:87555600-87571400	Strong transcription	Duodenum Smooth Muscle	Duodenum
50	chr8:87555600-87571600	Strong transcription	Primary B cells from peripheral blood	blood

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