Variant report

Variant	rs2120051
Chromosome Location	chr4:142806306-142806307
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10010190	0.97[ASN][1000 genomes]
rs10018731	0.90[ASN][1000 genomes]
rs11932790	0.93[ASN][1000 genomes]
rs11937562	0.93[ASN][1000 genomes]
rs12640909	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1493016	0.90[ASN][1000 genomes]
rs17644878	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17644908	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17645483	0.90[ASN][1000 genomes]
rs17701891	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17702304	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2067811	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2241911	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2322353	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28510073	0.97[ASN][1000 genomes]
rs28513280	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2874763	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4487442	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55696450	0.93[ASN][1000 genomes]
rs55748334	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56410852	0.93[ASN][1000 genomes]
rs58462825	0.93[ASN][1000 genomes]
rs72712491	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72712496	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72714418	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs923795	0.90[ASN][1000 genomes]
rs9999761	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027004	chr4:142487721-143007320	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv830095	chr4:142695078-142884988	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:142805400-142806400	Weak transcription	Sigmoid Colon	Sigmoid Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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