Variant report

Variant	rs212014
Chromosome Location	chr3:59977733-59977734
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10490808	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs11130742	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11130743	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12630463	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13061337	0.88[EUR][1000 genomes]
rs13063413	0.91[CEU][hapmap];0.87[EUR][1000 genomes]
rs13073897	0.87[EUR][1000 genomes]
rs13081936	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs13081972	0.90[EUR][1000 genomes]
rs13088505	0.90[EUR][1000 genomes]
rs13088669	0.87[EUR][1000 genomes]
rs13092173	0.88[CEU][hapmap];0.91[EUR][1000 genomes]
rs13092997	0.92[EUR][1000 genomes]
rs13094437	0.91[EUR][1000 genomes]
rs13096138	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs2736791	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3772458	0.90[EUR][1000 genomes]
rs3772468	0.90[EUR][1000 genomes]
rs3772473	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs3772483	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs3772491	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3772492	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3772497	0.82[CEU][hapmap]
rs3772499	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3772500	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3772502	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3772505	0.90[CEU][hapmap];0.89[EUR][1000 genomes]
rs3821478	0.90[EUR][1000 genomes]
rs3821479	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs3821481	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4679625	0.85[EUR][1000 genomes]
rs6446101	0.87[CEU][hapmap]
rs6771484	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs6784057	0.90[CEU][hapmap];0.90[EUR][1000 genomes]
rs7640107	1.00[CEU][hapmap];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428085	chr3:59782509-60070116	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1014983	chr3:59884024-60558331	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv590387	chr3:59890976-60481459	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv876838	chr3:59952152-59999690	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv590388	chr3:59957252-60018326	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59967400-59993000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr3:59968000-59986600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr3:59968400-59982600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr3:59972800-59980400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr3:59972800-59983600	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr3:59973200-59977800	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr3:59974200-59983000	Enhancers	Fetal Thymus	thymus
8	chr3:59974400-59983000	Enhancers	Thymus	Thymus
9	chr3:59975200-59979200	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr3:59975200-59984000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr3:59975600-59978800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr3:59976000-59981000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr3:59976800-59984000	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr3:59977000-59981600	Strong transcription	Dnd41	blood
15	chr3:59977200-59983800	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr3:59977600-59978400	Weak transcription	Primary T cells from cord blood	blood

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