Variant report

Variant	rs212063
Chromosome Location	chr3:60022161-60022162
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs212039	0.87[CEU][hapmap]
rs212041	0.87[CEU][hapmap]
rs212046	1.00[JPT][hapmap]
rs212047	1.00[JPT][hapmap];0.81[TSI][hapmap]
rs212055	1.00[JPT][hapmap]
rs212057	1.00[JPT][hapmap];0.81[TSI][hapmap]
rs212060	0.88[JPT][hapmap]
rs212062	1.00[JPT][hapmap];0.81[TSI][hapmap]
rs2630161	0.81[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428085	chr3:59782509-60070116	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1014983	chr3:59884024-60558331	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv590387	chr3:59890976-60481459	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv834707	chr3:60005679-60184046	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs212063	CADPS	cis	parietal	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60013400-60022600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
2	chr3:60017200-60022800	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr3:60020200-60030000	Weak transcription	Primary T cells from cord blood	blood
4	chr3:60021000-60024800	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr3:60021000-60031600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr3:60021200-60022200	Enhancers	Thymus	Thymus
7	chr3:60021600-60022400	Enhancers	Dnd41	blood
8	chr3:60021800-60026400	Weak transcription	Fetal Thymus	thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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