Variant report

Variant	rs2120831
Chromosome Location	chr4:95925634-95925635
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:95924834..95926933-chr4:95930140..95932231,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11097454	0.87[AMR][1000 genomes]
rs13129062	0.87[AMR][1000 genomes]
rs1444920	0.87[AMR][1000 genomes]
rs1444921	0.87[AMR][1000 genomes]
rs1545329	0.87[AMR][1000 genomes]
rs1822826	0.87[AMR][1000 genomes]
rs1836263	0.85[AMR][1000 genomes]
rs1838501	0.87[AMR][1000 genomes]
rs1867542	0.87[AMR][1000 genomes]
rs2114535	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2120832	0.87[AMR][1000 genomes]
rs4450936	0.87[AMR][1000 genomes]
rs4588466	0.87[AMR][1000 genomes]
rs4699827	0.87[AMR][1000 genomes]
rs4699828	0.87[AMR][1000 genomes]
rs6532524	1.00[AMR][1000 genomes]
rs6816059	0.87[AMR][1000 genomes]
rs6820199	0.87[AMR][1000 genomes]
rs6836504	0.87[AMR][1000 genomes]
rs6841746	0.87[AMR][1000 genomes]
rs6843668	0.87[AMR][1000 genomes]
rs716190	0.87[AMR][1000 genomes]
rs7698787	0.87[AMR][1000 genomes]
rs965447	0.87[AMR][1000 genomes]
rs973887	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932216	chr4:95501261-96109807	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1003860	chr4:95507683-96120619	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv492312	chr4:95823124-96128327	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv997787	chr4:95859839-95934105	Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv537190	chr4:95859839-95934105	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv879622	chr4:95917980-95984379	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95918000-95926200	Weak transcription	Thymus	Thymus
2	chr4:95921800-95926000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr4:95922200-95925800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr4:95924000-95938200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr4:95925400-95933800	Weak transcription	A549	lung
6	chr4:95925600-95926800	Enhancers	Dnd41	blood

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