Variant report
Variant | rs2120987 |
---|---|
Chromosome Location | chr3:145053595-145053596 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr3:145047302..145049061-chr3:145051775..145054184,2 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10084737 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs10084738 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs11712536 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs13096188 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs1348661 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs1356260 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs1356261 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs1400270 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs1400271 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs1400272 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs1445373 | 0.86[EUR][1000 genomes] |
rs1445376 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs1445377 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs1445378 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs1445379 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs1516540 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs1516541 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs1516542 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs1516544 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs1562209 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs1562210 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs1588968 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs1588969 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs1666489 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs1666490 | 0.87[EUR][1000 genomes] |
rs1731410 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs1731411 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs2029015 | 0.89[EUR][1000 genomes] |
rs2044381 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs2044382 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs2044383 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs2084066 | 0.87[EUR][1000 genomes] |
rs2120988 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs2218486 | 0.87[EUR][1000 genomes] |
rs2375720 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs2375721 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs2375722 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs2889167 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs35731231 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs4398381 | 0.87[EUR][1000 genomes] |
rs4398382 | 0.81[EUR][1000 genomes] |
rs4402884 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs4402885 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs5014205 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs5021784 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs5021786 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs6440347 | 0.87[EUR][1000 genomes] |
rs6763486 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs6765475 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs6769694 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs6776993 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs6791008 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs6801085 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs6801527 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs6801920 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs6803791 | 0.87[EUR][1000 genomes] |
rs7647336 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs7652254 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs9809414 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs9842967 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs9842972 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs9842973 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1004792 | chr3:144658885-145191801 | Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
2 | nsv877581 | chr3:144815506-145181910 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
3 | nsv998288 | chr3:144815560-145147528 | Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
4 | nsv877583 | chr3:144880588-145066106 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
5 | nsv877584 | chr3:144903957-145833232 | Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
6 | nsv998876 | chr3:144946062-145228614 | Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
7 | nsv877587 | chr3:144949453-145355433 | Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
8 | nsv877588 | chr3:144962452-145053828 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
9 | nsv877589 | chr3:144962452-145066106 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
10 | nsv877591 | chr3:144968890-145053828 | Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
11 | nsv877592 | chr3:144968890-145066106 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
12 | nsv877593 | chr3:144968890-145092747 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
13 | nsv460877 | chr3:144968890-145174583 | Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
14 | nsv591932 | chr3:144968890-145174583 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
15 | nsv877594 | chr3:144979382-145053828 | Enhancers Active TSS Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
16 | nsv877595 | chr3:144979382-145066106 | Active TSS Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
17 | nsv1001500 | chr3:144992948-145211714 | Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
18 | nsv470927 | chr3:144994727-145151554 | Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
19 | nsv1003916 | chr3:144996733-145146269 | Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
20 | nsv1001371 | chr3:145028362-145124968 | Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr3:145052000-145054800 | Active TSS | ES-I3 Cell Line | embryonic stem cell |