Variant report

Variant	rs2122146
Chromosome Location	chr3:158951696-158951697
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10936174	0.82[CHB][hapmap];0.88[CHD][hapmap];0.89[GIH][hapmap];0.89[JPT][hapmap];0.80[ASN][1000 genomes]
rs11717652	0.83[CHB][hapmap];0.95[JPT][hapmap]
rs11717685	0.83[CHB][hapmap];0.88[JPT][hapmap]
rs11717768	0.89[GIH][hapmap];0.95[JPT][hapmap]
rs1375408	0.80[ASN][1000 genomes]
rs1449016	0.80[ASN][1000 genomes]
rs1449022	0.80[AMR][1000 genomes]
rs16830003	0.83[CHB][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap]
rs1962071	0.83[CHB][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap]
rs2244434	0.81[AMR][1000 genomes]
rs2365482	0.83[CHB][hapmap];0.95[JPT][hapmap]
rs2365484	0.83[CHB][hapmap];0.85[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap]
rs2595257	1.00[JPT][hapmap]
rs2595259	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2595260	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap]
rs2595261	0.81[CEU][hapmap]
rs2621279	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs4269119	0.89[GIH][hapmap];0.95[JPT][hapmap]
rs4342140	0.95[JPT][hapmap]
rs4419423	0.89[GIH][hapmap];0.95[JPT][hapmap]
rs4432697	0.95[JPT][hapmap]
rs56232508	0.80[ASN][1000 genomes]
rs60468802	0.80[ASN][1000 genomes]
rs61332355	0.80[ASN][1000 genomes]
rs6782119	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530059	chr3:158332590-159147549	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv470971	chr3:158590928-159158217	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	esv3426016	chr3:158676623-158979242	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv491927	chr3:158692653-158952780	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1012602	chr3:158800182-159031618	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:158949200-158952000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr3:158951000-158952400	Enhancers	Osteobl	bone

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