Variant report

Variant	rs2122212
Chromosome Location	chr13:39250862-39250863
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:39246701..39249214-chr13:39250348..39252397,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11147723	0.90[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11147725	0.90[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17244358	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2053848	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2122208	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2122211	1.00[YRI][hapmap]
rs2197879	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2442335	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2442339	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2442340	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2442341	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2442343	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2442344	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2442373	0.89[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2442379	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2496418	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2496419	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2496420	0.90[CHB][hapmap];0.86[JPT][hapmap];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2496425	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35378642	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4329795	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55860060	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55922882	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6563629	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7331440	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7991701	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs895895	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs930659	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs930660	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9566354	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9576589	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9576590	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9576591	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9576592	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9576595	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9634754	0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9788341	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832584	chr13:39074265-39284724	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv832585	chr13:39233307-39424375	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39248800-39254000	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr13:39248800-39254000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr13:39248800-39254200	Weak transcription	HUES48 Cell Line	embryonic stem cell

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