Variant report

Variant	rs2123296
Chromosome Location	chr2:208956423-208956424
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10932231	0.89[ASN][1000 genomes]
rs10932232	0.88[ASN][1000 genomes]
rs10932233	0.89[ASN][1000 genomes]
rs10932237	0.87[ASN][1000 genomes]
rs10932238	1.00[ASN][1000 genomes]
rs11681747	0.97[ASN][1000 genomes]
rs11683477	0.89[ASN][1000 genomes]
rs11694118	0.98[ASN][1000 genomes]
rs11892539	0.98[ASN][1000 genomes]
rs11892554	0.97[ASN][1000 genomes]
rs11894673	0.91[ASN][1000 genomes]
rs11896152	0.90[ASN][1000 genomes]
rs11896248	0.90[ASN][1000 genomes]
rs12465847	0.96[ASN][1000 genomes]
rs12987978	0.90[ASN][1000 genomes]
rs16840404	0.90[ASN][1000 genomes]
rs17538082	0.88[ASN][1000 genomes]
rs34100088	0.90[ASN][1000 genomes]
rs35306034	0.90[ASN][1000 genomes]
rs4234085	0.91[ASN][1000 genomes]
rs4287753	0.90[ASN][1000 genomes]
rs4673378	0.84[ASN][1000 genomes]
rs4675729	0.91[ASN][1000 genomes]
rs4675730	0.91[ASN][1000 genomes]
rs4675731	1.00[ASN][1000 genomes]
rs62192797	0.91[ASN][1000 genomes]
rs6711974	0.91[ASN][1000 genomes]
rs6723206	0.91[ASN][1000 genomes]
rs6727089	0.91[ASN][1000 genomes]
rs6727122	0.91[ASN][1000 genomes]
rs6735060	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6746998	0.89[ASN][1000 genomes]
rs7422654	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7422655	0.97[ASN][1000 genomes]
rs896637	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010531	chr2:208610639-209176782	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv536130	chr2:208610639-209176782	Weak transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv534496	chr2:208814372-209302791	Strong transcription Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv875744	chr2:208952810-208994045	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:208951600-208957800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr2:208956400-208957000	Weak transcription	Fetal Intestine Large	intestine
3	chr2:208956400-208957800	Enhancers	Fetal Stomach	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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