Variant report

Variant	rs2125758
Chromosome Location	chr21:15993705-15993706
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13433483	1.00[AMR][1000 genomes]
rs2125757	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28885516	1.00[AMR][1000 genomes]
rs9981435	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9983376	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834045	chr21:15900678-16112850	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv834046	chr21:15903792-16077369	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:15992200-15994600	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
2	chr21:15992800-15994800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
3	chr21:15993200-15994000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
4	chr21:15993400-15994400	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr21:15993600-15994400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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