Variant report

Variant	rs2126758
Chromosome Location	chr10:53720742-53720743
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:53149205..53149730-chr10:53720127..53720824,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10466027	0.84[AFR][1000 genomes]
rs11000243	0.84[AFR][1000 genomes]
rs11596261	0.81[EUR][1000 genomes]
rs11598381	0.92[EUR][1000 genomes]
rs17639165	0.87[EUR][1000 genomes]
rs1903956	0.88[AFR][1000 genomes]
rs1903961	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1904045	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1904047	0.89[EUR][1000 genomes]
rs1993859	0.89[EUR][1000 genomes]
rs1993860	0.89[EUR][1000 genomes]
rs2447646	0.89[EUR][1000 genomes]
rs2447647	0.89[EUR][1000 genomes]
rs2454551	0.89[EUR][1000 genomes]
rs2454553	0.89[EUR][1000 genomes]
rs3101704	0.85[EUR][1000 genomes]
rs57044824	0.84[AFR][1000 genomes]
rs7071612	0.84[AFR][1000 genomes]
rs73337276	0.84[AFR][1000 genomes]
rs73339228	0.88[AFR][1000 genomes]
rs73339273	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73339302	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045692	chr10:53301450-54086823	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:53713400-53742400	Weak transcription	Aorta	Aorta
2	chr10:53719800-53720800	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr10:53719800-53721000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr10:53720400-53720800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
5	chr10:53720400-53720800	Enhancers	H1 Cell Line	embryonic stem cell
6	chr10:53720400-53720800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:53720400-53720800	Enhancers	H9 Cell Line	embryonic stem cell
8	chr10:53720400-53720800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:53720400-53720800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr10:53720400-53720800	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr10:53720400-53720800	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr10:53720400-53720800	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr10:53720400-53720800	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr10:53720400-53720800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr10:53720400-53720800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr10:53720400-53720800	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr10:53720400-53720800	Flanking Active TSS	Brain Anterior Caudate	brain
18	chr10:53720400-53720800	Enhancers	Brain Cingulate Gyrus	brain
19	chr10:53720400-53720800	Enhancers	Brain Hippocampus Middle	brain
20	chr10:53720400-53720800	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr10:53720400-53720800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
22	chr10:53720400-53720800	Enhancers	Brain Substantia Nigra	brain
23	chr10:53720400-53720800	Enhancers	Fetal Brain Male	brain
24	chr10:53720400-53720800	Active TSS	Fetal Brain Female	brain
25	chr10:53720400-53720800	Enhancers	Fetal Lung	lung
26	chr10:53720400-53720800	Enhancers	Fetal Muscle Leg	muscle
27	chr10:53720400-53720800	Enhancers	Psoas Muscle	Psoas
28	chr10:53720400-53720800	Enhancers	Rectal Smooth Muscle	rectum
29	chr10:53720400-53720800	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr10:53720400-53720800	Enhancers	Stomach Smooth Muscle	stomach
31	chr10:53720400-53720800	Enhancers	NHDF-Ad	bronchial
32	chr10:53720400-53721000	Enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr10:53720400-53721000	Enhancers	NHLF	lung
34	chr10:53720400-53721600	Enhancers	Duodenum Mucosa	Duodenum
35	chr10:53720600-53721200	Enhancers	Fetal Stomach	stomach
36	chr10:53720600-53721200	Enhancers	Stomach Mucosa	stomach

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