Variant report

Variant	rs212698
Chromosome Location	chr2:32442997-32442998
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:32393475..32396085-chr2:32440047..32443005,2	K562	blood:

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs11681731	0.84[EUR][1000 genomes]
rs12474443	0.81[EUR][1000 genomes]
rs12617289	0.84[EUR][1000 genomes]
rs12617290	0.83[EUR][1000 genomes]
rs13022197	0.84[EUR][1000 genomes]
rs177083	0.86[ASN][1000 genomes]
rs212678	0.85[EUR][1000 genomes]
rs212679	0.89[EUR][1000 genomes]
rs212694	0.97[ASN][1000 genomes]
rs212695	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs212699	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs212700	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs212701	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs212704	0.84[ASN][1000 genomes]
rs212706	0.84[ASN][1000 genomes]
rs212707	0.84[ASN][1000 genomes]
rs212708	0.84[ASN][1000 genomes]
rs212714	0.87[AMR][1000 genomes]
rs212715	0.85[EUR][1000 genomes]
rs212716	0.85[EUR][1000 genomes]
rs212717	0.85[EUR][1000 genomes]
rs212718	0.84[EUR][1000 genomes]
rs212721	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs212722	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs212723	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs212724	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs212725	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs212726	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs212727	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs212728	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs212730	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs212731	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs212732	0.80[EUR][1000 genomes]
rs212733	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs212734	0.87[AMR][1000 genomes]
rs212735	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs212737	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs212739	0.85[EUR][1000 genomes]
rs212745	0.86[EUR][1000 genomes]
rs212746	0.86[EUR][1000 genomes]
rs212752	0.93[ASN][1000 genomes]
rs212756	0.94[ASN][1000 genomes]
rs212757	0.93[ASN][1000 genomes]
rs212758	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs212759	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs212760	0.89[EUR][1000 genomes]
rs2235134	0.82[EUR][1000 genomes]
rs2365558	0.83[EUR][1000 genomes]
rs2566483	0.82[EUR][1000 genomes]
rs408813	0.82[EUR][1000 genomes]
rs428002	0.81[EUR][1000 genomes]
rs430759	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs443609	0.81[EUR][1000 genomes]
rs455060	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs466126	0.80[EUR][1000 genomes]
rs494569	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4952247	0.82[EUR][1000 genomes]
rs4952250	0.83[EUR][1000 genomes]
rs59966205	0.82[EUR][1000 genomes]
rs6543649	0.83[EUR][1000 genomes]
rs659239	0.82[EUR][1000 genomes]
rs7559964	0.80[EUR][1000 genomes]
rs7573543	0.84[EUR][1000 genomes]
rs7581032	0.82[EUR][1000 genomes]
rs7581340	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949102	chr2:32030307-33011548	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv833670	chr2:32295778-32481857	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv817386	chr2:32332893-32724794	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv1001038	chr2:32333378-32657112	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv1009359	chr2:32333378-32725117	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
6	nsv535613	chr2:32333378-32725117	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
7	esv2422335	chr2:32412330-33200581	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:32391600-32452800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:32391800-32453800	Weak transcription	Colonic Mucosa	Colon
3	chr2:32392200-32445200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr2:32392800-32447600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr2:32399200-32449600	Weak transcription	Rectal Smooth Muscle	rectum
6	chr2:32403000-32452200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr2:32404200-32445200	Weak transcription	Brain Angular Gyrus	brain
8	chr2:32404200-32447600	Weak transcription	Pancreas	Pancrea
9	chr2:32404200-32448000	Weak transcription	Colon Smooth Muscle	Colon
10	chr2:32404200-32452400	Weak transcription	Right Ventricle	heart
11	chr2:32404200-32460600	Weak transcription	Esophagus	oesophagus
12	chr2:32404400-32447400	Weak transcription	HUVEC	blood vessel
13	chr2:32404400-32450800	Weak transcription	Gastric	stomach
14	chr2:32404800-32447800	Weak transcription	Brain Hippocampus Middle	brain
15	chr2:32410400-32445200	Weak transcription	Fetal Kidney	kidney
16	chr2:32410600-32445200	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr2:32411400-32445400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr2:32411600-32447800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr2:32412000-32450400	Weak transcription	Spleen	Spleen
20	chr2:32412200-32444200	Weak transcription	Fetal Brain Female	brain
21	chr2:32412800-32445200	Weak transcription	Brain Substantia Nigra	brain
22	chr2:32415200-32445200	Weak transcription	HMEC	breast
23	chr2:32419200-32446800	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr2:32419800-32445200	Weak transcription	HSMM	muscle
25	chr2:32420800-32447000	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr2:32421200-32445000	Weak transcription	Thymus	Thymus
27	chr2:32421200-32445400	Weak transcription	Fetal Heart	heart
28	chr2:32421400-32443000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr2:32422000-32452400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr2:32423000-32443200	Weak transcription	GM12878-XiMat	blood
31	chr2:32423000-32447400	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr2:32423400-32448000	Weak transcription	Small Intestine	intestine
33	chr2:32423600-32445200	Weak transcription	NH-A	brain
34	chr2:32424400-32445200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr2:32424400-32447400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr2:32424400-32447600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr2:32424400-32447600	Weak transcription	Brain Cingulate Gyrus	brain
38	chr2:32424400-32455400	Weak transcription	Fetal Brain Male	brain
39	chr2:32426400-32455000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr2:32426800-32443000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr2:32426800-32443200	Weak transcription	NHEK	skin
42	chr2:32426800-32445000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr2:32426800-32445200	Weak transcription	HSMMtube	muscle
44	chr2:32426800-32447600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr2:32426800-32447600	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr2:32427000-32444400	Weak transcription	Lung	lung
47	chr2:32427000-32444800	Weak transcription	Dnd41	blood
48	chr2:32427000-32447400	Weak transcription	Ovary	ovary
49	chr2:32427200-32445200	Weak transcription	A549	lung
50	chr2:32427400-32444400	Weak transcription	Skeletal Muscle Female	skeletal muscle

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