Variant report

Variant	rs2127510
Chromosome Location	chr11:65472727-65472728
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:65472457..65475716-chr11:65659486..65662901,4	K562	blood:
2	chr11:65420713..65423580-chr11:65469656..65472894,3	MCF-7	breast:
3	chr11:65471574..65474478-chr11:65475750..65478986,4	K562	blood:
4	chr11:65472429..65485450-chr11:65615794..65629774,38	K562	blood:
5	chr11:65393221..65395190-chr11:65470745..65473390,2	MCF-7	breast:
6	chr11:65459897..65463173-chr11:65470504..65473536,3	K562	blood:

Variant related genes	Relation type
ENSG00000197136	Chromatin interaction
ENSG00000172757	Chromatin interaction
ENSG00000172732	Chromatin interaction
ENSG00000239356	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11227247	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12417989	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12418567	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12418630	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12418683	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12419110	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12420405	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12420618	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12421691	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1962691	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1963977	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2075660	0.86[AMR][1000 genomes]
rs2236683	0.97[EUR][1000 genomes]
rs2306365	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35927673	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs36028748	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs36091060	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36113281	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3741378	0.81[EUR][1000 genomes]
rs4578394	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4645916	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4645917	0.90[EUR][1000 genomes]
rs4930158	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4930299	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55758897	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56115979	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56236098	0.81[EUR][1000 genomes]
rs7101916	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7107503	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7119750	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7122081	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7122098	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897716	chr11:65083491-65481166	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	999 gene(s)	inside rSNPs	diseases
2	nsv897718	chr11:65140209-65577516	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1003 gene(s)	inside rSNPs	diseases
3	nsv897723	chr11:65294830-65481166	Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
4	nsv897735	chr11:65335705-65481166	Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
5	nsv897736	chr11:65335705-65676516	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	227 gene(s)	inside rSNPs	diseases
6	nsv897747	chr11:65353906-65481166	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
7	nsv897755	chr11:65405300-65481166	Strong transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
8	nsv430401	chr11:65419324-65788024	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	224 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65463800-65474000	Weak transcription	Pancreas	Pancrea
2	chr11:65464800-65474000	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr11:65467800-65473400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:65468200-65473400	Weak transcription	Primary B cells from peripheral blood	blood
5	chr11:65468200-65474000	Weak transcription	Brain Substantia Nigra	brain
6	chr11:65468200-65478600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr11:65470600-65474000	Weak transcription	K562	blood
8	chr11:65472400-65472800	Weak transcription	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links