Variant report

Variant	rs2129426
Chromosome Location	chr15:59486093-59486094
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1032179	0.82[ASN][1000 genomes]
rs1032180	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1032181	0.82[ASN][1000 genomes]
rs1032182	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs11071411	0.80[ASN][1000 genomes]
rs11071412	0.80[ASN][1000 genomes]
rs12440901	0.83[CEU][hapmap];0.80[EUR][1000 genomes]
rs12898305	0.84[EUR][1000 genomes]
rs12915115	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1565018	0.80[EUR][1000 genomes]
rs17269566	0.82[ASN][1000 genomes]
rs2029212	0.82[ASN][1000 genomes]
rs2171286	0.82[ASN][1000 genomes]
rs34412930	0.84[EUR][1000 genomes]
rs35227552	0.83[ASN][1000 genomes]
rs3794494	0.81[CHB][hapmap]
rs3794497	0.81[ASN][1000 genomes]
rs3809528	0.83[CEU][hapmap];0.80[EUR][1000 genomes]
rs3809529	0.83[CEU][hapmap]
rs3809530	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs3825937	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs4775123	0.82[ASN][1000 genomes]
rs4775124	0.82[ASN][1000 genomes]
rs56108450	0.80[ASN][1000 genomes]
rs58948844	0.80[ASN][1000 genomes]
rs7162863	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7169859	0.80[EUR][1000 genomes]
rs7170182	0.83[CEU][hapmap];0.80[EUR][1000 genomes]
rs7178908	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7182279	0.84[EUR][1000 genomes]
rs9788755	0.83[ASN][1000 genomes]
rs999139	0.84[EUR][1000 genomes]
rs999140	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv833025	chr15:59336148-59522176	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv1035868	chr15:59402426-59530594	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv833027	chr15:59474806-59608544	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59464400-59496800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:59467800-59523200	Weak transcription	Fetal Brain Female	brain
3	chr15:59468200-59528600	Weak transcription	Stomach Mucosa	stomach
4	chr15:59468600-59521400	Strong transcription	Rectal Mucosa Donor 29	rectum
5	chr15:59468800-59490800	Strong transcription	Duodenum Mucosa	Duodenum
6	chr15:59468800-59492600	Strong transcription	Fetal Intestine Large	intestine
7	chr15:59475200-59486800	Weak transcription	Pancreas	Pancrea
8	chr15:59475200-59503200	Strong transcription	Liver	Liver
9	chr15:59475800-59498200	Strong transcription	Primary B cells from peripheral blood	blood
10	chr15:59475800-59517800	Strong transcription	HUES48 Cell Line	embryonic stem cell
11	chr15:59476000-59488000	Strong transcription	HUES6 Cell Line	embryonic stem cell
12	chr15:59476200-59490600	Strong transcription	Rectal Mucosa Donor 31	rectum
13	chr15:59476800-59486400	Weak transcription	Right Ventricle	heart
14	chr15:59477000-59498000	Strong transcription	GM12878-XiMat	blood
15	chr15:59477800-59486800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr15:59478800-59486800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr15:59479400-59487800	Strong transcription	Cortex derived primary cultured neurospheres	brain
18	chr15:59479400-59488200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr15:59479600-59488400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
20	chr15:59480200-59492400	Weak transcription	Fetal Heart	heart
21	chr15:59480200-59499200	Weak transcription	Fetal Lung	lung
22	chr15:59480200-59507200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr15:59480400-59486800	Weak transcription	Psoas Muscle	Psoas
24	chr15:59480600-59496400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr15:59480600-59507600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr15:59481000-59487800	Strong transcription	Primary B cells from cord blood	blood
27	chr15:59481000-59492000	Strong transcription	Fetal Intestine Small	intestine
28	chr15:59481400-59487600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr15:59481400-59496000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr15:59481600-59488600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
31	chr15:59481800-59487800	Strong transcription	Fetal Muscle Trunk	muscle
32	chr15:59481800-59487800	Strong transcription	Left Ventricle	heart
33	chr15:59482000-59487600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr15:59482000-59487800	Strong transcription	Fetal Muscle Leg	muscle
35	chr15:59482200-59487800	Strong transcription	Spleen	Spleen
36	chr15:59482200-59488000	Strong transcription	Gastric	stomach
37	chr15:59482400-59487800	Strong transcription	HepG2	liver
38	chr15:59482800-59486600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr15:59482800-59499400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr15:59483200-59486400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr15:59483200-59486600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr15:59483200-59486800	Weak transcription	Lung	lung
43	chr15:59483200-59514000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr15:59483800-59487600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr15:59483800-59487800	Strong transcription	Monocytes-CD14+_RO01746	blood
46	chr15:59484000-59487600	Strong transcription	Duodenum Smooth Muscle	Duodenum
47	chr15:59484000-59488000	Strong transcription	HUES64 Cell Line	embryonic stem cell
48	chr15:59484200-59487800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr15:59484200-59487800	Strong transcription	Placenta	Placenta
50	chr15:59484200-59499400	Weak transcription	Fetal Kidney	kidney

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