Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1125377	1.00[JPT][hapmap]
rs1156147	0.81[AMR][1000 genomes]
rs11918522	1.00[JPT][hapmap]
rs16860073	1.00[JPT][hapmap]
rs16860075	1.00[JPT][hapmap]
rs16860127	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs16860128	1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs16860141	1.00[JPT][hapmap]
rs1873041	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs2087254	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2173820	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4292202	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4390897	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4682119	1.00[JPT][hapmap]
rs4682437	0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4682449	0.81[AMR][1000 genomes]
rs6809029	1.00[JPT][hapmap]
rs6809039	1.00[JPT][hapmap]
rs72950332	1.00[ASN][1000 genomes]
rs72950361	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7610468	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7625445	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7625533	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7636831	0.82[CHB][hapmap]
rs7637319	1.00[JPT][hapmap]
rs7642984	1.00[CHB][hapmap]
rs9799065	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	esv3501334	chr3:112546820-112648766	Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv3501335	chr3:112546820-112648766	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112623000-112624200	Enhancers	Primary B cells from peripheral blood	blood
2	chr3:112623400-112624400	Enhancers	Primary B cells from cord blood	blood
3	chr3:112623600-112624200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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