Variant report

Variant	rs2129969
Chromosome Location	chr11:45586169-45586170
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10838488	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11038547	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12421590	0.92[CEU][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7929237	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897310	chr11:45487041-45631953	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2129969	CHST1	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45582600-45588000	Weak transcription	Fetal Brain Female	brain
2	chr11:45584000-45590400	Weak transcription	Fetal Brain Male	brain
3	chr11:45585200-45589400	Weak transcription	Brain Germinal Matrix	brain
4	chr11:45585800-45586400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:45585800-45598000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:45586000-45588800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr11:45586000-45589000	Weak transcription	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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