Variant report

Variant	rs2130095
Chromosome Location	chr12:48638755-48638756
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C12orf68-1	chr12:48637284-48639062	XLOC_009734

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1074174	0.86[ASN][1000 genomes]
rs10783237	0.90[ASN][1000 genomes]
rs10783239	0.96[ASN][1000 genomes]
rs1387256	0.93[ASN][1000 genomes]
rs1489111	0.89[ASN][1000 genomes]
rs1552551	0.93[ASN][1000 genomes]
rs1906718	0.89[ASN][1000 genomes]
rs2013956	0.88[ASN][1000 genomes]
rs2054902	0.80[ASN][1000 genomes]
rs2258342	0.88[ASN][1000 genomes]
rs2634699	0.88[ASN][1000 genomes]
rs2634701	0.89[ASN][1000 genomes]
rs2732440	0.91[ASN][1000 genomes]
rs2732443	0.89[ASN][1000 genomes]
rs2732446	0.87[ASN][1000 genomes]
rs2732451	0.81[ASN][1000 genomes]
rs2732455	0.89[ASN][1000 genomes]
rs2732474	0.85[ASN][1000 genomes]
rs2732475	0.85[ASN][1000 genomes]
rs2732476	0.86[ASN][1000 genomes]
rs2732477	0.85[ASN][1000 genomes]
rs2732478	0.85[ASN][1000 genomes]
rs2732487	0.89[ASN][1000 genomes]
rs2932106	0.83[ASN][1000 genomes]
rs2932107	0.88[ASN][1000 genomes]
rs2956704	0.89[ASN][1000 genomes]
rs3989427	0.86[ASN][1000 genomes]
rs4760623	0.96[ASN][1000 genomes]
rs7134201	0.89[ASN][1000 genomes]
rs7134565	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7294641	0.88[ASN][1000 genomes]
rs7304709	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7953726	0.94[ASN][1000 genomes]
rs901964	0.89[ASN][1000 genomes]
rs9645811	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs987986	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758307	chr12:48429702-48825499	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	esv2759898	chr12:48429702-48825499	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv8971	chr12:48536526-48758501	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	esv34439	chr12:48541757-48779562	Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
5	esv2757502	chr12:48547128-48779562	Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
6	esv33956	chr12:48565643-48645561	Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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