Variant report

Variant	rs2130717
Chromosome Location	chr10:98884842-98884843
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11189008	0.82[EUR][1000 genomes]
rs12256938	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1490692	0.84[EUR][1000 genomes]
rs1490693	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1490694	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1490695	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2279508	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2279509	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4919071	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7074984	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7078332	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7078655	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7894400	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7895198	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7895402	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7898611	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7899087	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7911034	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	esv2758236	chr10:98789963-98962472	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2759777	chr10:98789963-98962472	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98870200-98887800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr10:98873600-98890000	Strong transcription	Fetal Thymus	thymus
3	chr10:98879600-98887600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr10:98880200-98912800	Weak transcription	Thymus	Thymus
5	chr10:98880400-98891600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr10:98882400-98889400	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr10:98883400-98885200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr10:98884600-98886000	Weak transcription	Fetal Brain Female	brain
9	chr10:98884600-98886200	Weak transcription	Brain Germinal Matrix	brain
10	chr10:98884800-98885800	Weak transcription	Fetal Brain Male	brain
11	chr10:98884800-98887400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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