Variant report

Variant	rs2133176
Chromosome Location	chr1:214464104-214464105
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:214461559..214464965-chr1:214465950..214468310,3	K562	blood:
2	chr1:214458191..214461391-chr1:214463653..214467644,4	K562	blood:
3	chr1:214462833..214466759-chr1:214468117..214470451,4	K562	blood:
4	chr1:214453247..214457294-chr1:214460008..214465638,7	MCF-7	breast:
5	chr1:214462387..214466759-chr1:214468789..214472105,4	K562	blood:

Variant related genes	Relation type
ENSG00000143499	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10157166	0.88[CEU][hapmap]
rs11120288	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs12735074	0.86[AFR][1000 genomes]
rs2361230	0.82[AFR][1000 genomes]
rs6691532	0.90[AFR][1000 genomes]
rs7522398	0.84[AFR][1000 genomes]
rs7544984	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9308433	0.88[CEU][hapmap]
rs9308434	0.96[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs985853	0.87[AMR][1000 genomes]

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214455600-214487800	Weak transcription	Primary B cells from cord blood	blood
2	chr1:214455600-214489000	Weak transcription	Ovary	ovary
3	chr1:214456000-214469200	Weak transcription	NH-A	brain
4	chr1:214456200-214469800	Weak transcription	Fetal Lung	lung
5	chr1:214456400-214468800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr1:214456400-214470000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr1:214456400-214491800	Weak transcription	Pancreas	Pancrea
8	chr1:214456600-214467800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr1:214456600-214483200	Weak transcription	Primary B cells from peripheral blood	blood
10	chr1:214456800-214465000	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr1:214456800-214465400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr1:214456800-214468800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr1:214456800-214470000	Weak transcription	HMEC	breast
14	chr1:214457200-214478200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr1:214458600-214470000	Weak transcription	A549	lung
16	chr1:214459200-214468200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr1:214459200-214469400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr1:214459200-214483000	Weak transcription	Liver	Liver
19	chr1:214459200-214491400	Weak transcription	Duodenum Mucosa	Duodenum
20	chr1:214459400-214464400	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr1:214459600-214468800	Weak transcription	GM12878-XiMat	blood
22	chr1:214459800-214467800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr1:214461400-214465600	Enhancers	Fetal Heart	heart
24	chr1:214461400-214475800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr1:214461600-214475600	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr1:214461600-214483000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr1:214461800-214468800	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr1:214461800-214482800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr1:214462000-214469200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr1:214462000-214469600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr1:214462000-214469600	Weak transcription	Hela-S3	cervix
32	chr1:214462000-214471400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr1:214462000-214491800	Weak transcription	NHEK	skin
34	chr1:214462200-214466400	Enhancers	Fetal Intestine Small	intestine
35	chr1:214462400-214465200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
36	chr1:214462400-214470200	Weak transcription	HSMMtube	muscle
37	chr1:214462400-214475800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr1:214462600-214464200	Enhancers	Fetal Intestine Large	intestine
39	chr1:214462600-214465400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr1:214462600-214483200	Weak transcription	Dnd41	blood
41	chr1:214462800-214464400	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr1:214462800-214465000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr1:214462800-214469000	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chr1:214463000-214464400	Enhancers	Adipose Nuclei	Adipose
45	chr1:214463200-214464400	Enhancers	NHDF-Ad	bronchial
46	chr1:214463200-214465000	Enhancers	Skeletal Muscle Male	skeletal muscle
47	chr1:214463200-214466000	Enhancers	Skeletal Muscle Female	skeletal muscle
48	chr1:214463200-214467600	Weak transcription	Fetal Muscle Trunk	muscle
49	chr1:214463200-214475800	Weak transcription	Primary T cells from cord blood	blood
50	chr1:214463400-214464600	Weak transcription	Psoas Muscle	Psoas

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