Variant report

Variant	rs2134110
Chromosome Location	chr9:2877001-2877002
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr9:2876880-2877030	GM12867	blood:	n/a	n/a
2	STAT3	chr9:2876979-2877014	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000236496	TF binding region

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10120379	1.00[CEU][hapmap]
rs10968705	0.84[EUR][1000 genomes]
rs10968706	0.84[EUR][1000 genomes]
rs10968708	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10968723	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs11789433	0.82[CEU][hapmap]
rs12339768	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs12376552	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12378030	0.81[EUR][1000 genomes]
rs12380861	0.84[EUR][1000 genomes]
rs13297517	0.85[CEU][hapmap]
rs13299812	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1501572	0.93[CEU][hapmap];0.84[EUR][1000 genomes]
rs1909955	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs2062676	0.82[EUR][1000 genomes]
rs2376415	0.81[CEU][hapmap]
rs35547088	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4013819	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs6476115	0.85[EUR][1000 genomes]
rs7036937	1.00[CEU][hapmap];0.87[CHB][hapmap]
rs7848307	0.86[EUR][1000 genomes]
rs7862297	0.89[CEU][hapmap]
rs7862374	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs905116	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530929	chr9:1998911-2925112	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv1017581	chr9:2494815-3172020	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv539934	chr9:2494815-3172020	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv892079	chr9:2681430-2931341	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv1024262	chr9:2703159-3067931	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	nsv1028011	chr9:2759097-2904277	Enhancers Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv892083	chr9:2809548-2900651	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv892084	chr9:2853103-2909883	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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