Variant report

Variant	rs2136990
Chromosome Location	chr4:26291679-26291680
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:26290132..26292297-chr4:26397412..26399747,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13113988	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13115664	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13142370	0.81[ASN][1000 genomes]
rs2309359	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2871198	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4256214	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7689800	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:44 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829889	chr4:26169954-26338313	Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv519405	chr4:26284472-26292555	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv593852	chr4:26284472-26292636	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv1793856	chr4:26284472-26294886	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv1794278	chr4:26284472-26294886	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv1798961	chr4:26284472-26294886	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv593853	chr4:26286920-26295174	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv3467038	chr4:26290291-26295493	Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3467039	chr4:26290345-26295472	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3467037	chr4:26290356-26295454	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv822510	chr4:26290417-26295069	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv822511	chr4:26290417-26295508	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3467036	chr4:26290453-26295391	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv3467040	chr4:26290468-26295388	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv13491	chr4:26290477-26295344	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv822512	chr4:26290842-26295508	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv593854	chr4:26291134-26292794	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv593855	chr4:26291134-26292900	Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv593856	chr4:26291134-26293155	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv593857	chr4:26291134-26293209	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv593858	chr4:26291134-26293794	Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
22	nsv593859	chr4:26291134-26294776	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
23	esv1794668	chr4:26291134-26294886	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
24	esv1796010	chr4:26291134-26294886	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
25	esv1797553	chr4:26291134-26294886	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
26	esv1798548	chr4:26291134-26294886	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
27	esv1798954	chr4:26291134-26294886	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
28	esv1801171	chr4:26291134-26294886	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
29	esv1802122	chr4:26291134-26294886	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
30	esv1803499	chr4:26291134-26294886	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
31	nsv593860	chr4:26291134-26294886	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
32	nsv593861	chr4:26291134-26295174	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
33	nsv593862	chr4:26291289-26294776	Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
34	esv1799004	chr4:26291289-26294886	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
35	esv1800568	chr4:26291289-26294886	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
36	esv1801092	chr4:26291289-26294886	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
37	esv1801246	chr4:26291289-26294886	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
38	esv1802301	chr4:26291289-26294886	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
39	esv1803207	chr4:26291289-26294886	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
40	nsv593863	chr4:26291289-26294886	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
41	nsv593864	chr4:26291528-26294776	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
42	esv1796332	chr4:26291528-26294886	Flanking Active TSS Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
43	esv1802395	chr4:26291528-26294886	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
44	nsv593865	chr4:26291528-26294886	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26289600-26292000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:26289600-26293000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:26289800-26292000	Enhancers	NHEK	skin
4	chr4:26290200-26292200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr4:26290200-26297200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr4:26290400-26291800	Weak transcription	HSMMtube	muscle
7	chr4:26290600-26291800	Enhancers	NHDF-Ad	bronchial
8	chr4:26290600-26292000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr4:26290600-26292000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr4:26290600-26297200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr4:26290600-26297800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr4:26290800-26292000	Enhancers	Placenta	Placenta
13	chr4:26290800-26292000	Weak transcription	NHLF	lung
14	chr4:26291000-26291800	Enhancers	Fetal Lung	lung
15	chr4:26291200-26292200	Enhancers	Sigmoid Colon	Sigmoid Colon
16	chr4:26291200-26292400	Enhancers	Adipose Nuclei	Adipose
17	chr4:26291200-26292600	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr4:26291400-26292200	Weak transcription	Colon Smooth Muscle	Colon
19	chr4:26291400-26292200	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr4:26291400-26292200	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr4:26291400-26292800	Enhancers	Fetal Stomach	stomach
22	chr4:26291400-26296800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr4:26291600-26291800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
24	chr4:26291600-26292200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr4:26291600-26292200	Enhancers	Psoas Muscle	Psoas
26	chr4:26291600-26292400	Enhancers	Fetal Muscle Leg	muscle

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