Variant report

Variant	rs214046
Chromosome Location	chr2:56491604-56491605
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1030090	1.00[ASN][1000 genomes]
rs13415415	1.00[JPT][hapmap]
rs1549028	0.93[GIH][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17047623	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17047680	0.82[EUR][1000 genomes]
rs17190086	1.00[ASW][hapmap]
rs2080606	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs214038	1.00[ASN][1000 genomes]
rs214045	0.96[CEU][hapmap];0.91[TSI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59813060	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6545560	0.93[GIH][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6759030	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs985792	0.93[GIH][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530516	chr2:56447922-56633505	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56486600-56505000	Weak transcription	Left Ventricle	heart
2	chr2:56487600-56492200	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr2:56487800-56506000	Weak transcription	Psoas Muscle	Psoas
4	chr2:56488000-56493800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr2:56488000-56514000	Weak transcription	HSMM	muscle
6	chr2:56490600-56492000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr2:56490800-56491800	Enhancers	NHEK	skin
8	chr2:56491000-56491800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr2:56491200-56492200	Enhancers	HMEC	breast
10	chr2:56491600-56492000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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