Variant report

Variant	rs2140874
Chromosome Location	chr7:129603157-129603158
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1045897	0.82[ASN][1000 genomes]
rs1965542	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2692449	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2708635	0.80[CEU][hapmap];1.00[CHB][hapmap];0.82[TSI][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2708638	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2708639	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.83[EUR][1000 genomes]
rs2708644	0.80[EUR][1000 genomes]
rs2727509	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2727511	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34438031	0.88[ASN][1000 genomes]
rs34463221	0.88[ASN][1000 genomes]
rs34629832	0.88[ASN][1000 genomes]
rs35182759	0.88[ASN][1000 genomes]
rs35793528	0.88[ASN][1000 genomes]
rs6955829	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73473720	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533849	chr7:129462947-129616625	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv831129	chr7:129525406-129702477	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129592800-129608600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:129593400-129608400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:129598800-129629600	Weak transcription	Right Atrium	heart
4	chr7:129600000-129603200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr7:129600000-129603200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr7:129600000-129608600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr7:129600000-129608600	Weak transcription	A549	lung
8	chr7:129601200-129603400	Weak transcription	Placenta	Placenta
9	chr7:129601200-129607000	Weak transcription	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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