Variant report

Variant	rs2144459
Chromosome Location	chr6:120928140-120928141
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17082699	0.82[ASN][1000 genomes]
rs2358053	0.86[ASN][1000 genomes]
rs2358054	0.86[ASN][1000 genomes]
rs62442957	0.86[ASN][1000 genomes]
rs62442958	0.86[ASN][1000 genomes]
rs62444861	0.86[ASN][1000 genomes]
rs62444893	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753290	chr6:120309301-120979301	Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	esv2752474	chr6:120309301-120982301	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv428495	chr6:120861159-120954224	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:120926000-120928600	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr6:120926600-120928600	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr6:120927600-120928600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:120927600-120929000	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr6:120927800-120928400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr6:120927800-120928400	Enhancers	HUES64 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links