The 2.0 version of rSNPBase

Variant report

Variant rs2144884
Chromosome Location chr20:16327055-16327056
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:56 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:16262600-16346200 Weak transcription Gastric stomach
2 chr20:16276400-16348200 Weak transcription Colon Smooth Muscle Colon
3 chr20:16285400-16330000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
4 chr20:16288000-16332400 Weak transcription Brain Cingulate Gyrus brain
5 chr20:16289400-16348000 Weak transcription Colonic Mucosa Colon
6 chr20:16291400-16331000 Weak transcription Brain Inferior Temporal Lobe brain
7 chr20:16295600-16349000 Weak transcription HepG2 liver
8 chr20:16296600-16345200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
9 chr20:16298800-16333400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
10 chr20:16302800-16330600 Weak transcription Brain Substantia Nigra brain
11 chr20:16306600-16328400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
12 chr20:16308400-16329400 Weak transcription Skeletal Muscle Male skeletal muscle
13 chr20:16311800-16329000 Weak transcription Psoas Muscle Psoas
14 chr20:16312400-16331200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
15 chr20:16314000-16329600 Weak transcription Lung lung
16 chr20:16314600-16328800 Weak transcription Rectal Mucosa Donor 29 rectum
17 chr20:16315400-16330600 Weak transcription Brain Hippocampus Middle brain
18 chr20:16315400-16331000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
19 chr20:16315400-16345000 Weak transcription Duodenum Mucosa Duodenum
20 chr20:16315400-16346200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
21 chr20:16315400-16348000 Weak transcription Fetal Intestine Large intestine
22 chr20:16315400-16364400 Weak transcription Rectal Smooth Muscle rectum
23 chr20:16315600-16329600 Weak transcription Fetal Muscle Trunk muscle
24 chr20:16315600-16329800 Weak transcription Fetal Muscle Leg muscle
25 chr20:16315600-16331000 Weak transcription Aorta Aorta
26 chr20:16315600-16346200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
27 chr20:16315600-16348000 Weak transcription Primary B cells from peripheral blood blood
28 chr20:16315600-16348400 Weak transcription Spleen Spleen
29 chr20:16315800-16357600 Weak transcription Right Ventricle heart
30 chr20:16316000-16329600 Weak transcription Skeletal Muscle Female skeletal muscle
31 chr20:16316000-16332000 Weak transcription Brain Anterior Caudate brain
32 chr20:16316000-16344000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
33 chr20:16316000-16346200 Weak transcription Primary hematopoietic stem cells blood
34 chr20:16316000-16384400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
35 chr20:16316200-16347200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
36 chr20:16316600-16330800 Weak transcription Primary T helper cells PMA-I stimulated --
37 chr20:16317600-16327200 Weak transcription Left Ventricle heart
38 chr20:16318600-16346200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
39 chr20:16318600-16348400 Weak transcription Esophagus oesophagus
40 chr20:16318800-16345000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
41 chr20:16318800-16368200 Weak transcription Primary B cells from cord blood blood
42 chr20:16319000-16329600 Weak transcription Rectal Mucosa Donor 31 rectum
43 chr20:16319000-16345800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
44 chr20:16319000-16346200 Weak transcription Pancreas Pancrea
45 chr20:16319000-16346400 Weak transcription Fetal Intestine Small intestine
46 chr20:16320600-16336600 Weak transcription Primary T cells from cord blood blood
47 chr20:16322600-16346000 Weak transcription Duodenum Smooth Muscle Duodenum
48 chr20:16326200-16327200 Strong transcription Breast Myoepithelial Primary Cells Breast
49 chr20:16326200-16346000 Weak transcription Liver Liver
50 chr20:16326400-16327200 Strong transcription Ovary ovary

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Last update: Aug 31, 2015