Variant report

Variant	rs2146899
Chromosome Location	chr10:6343599-6343600
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:6243246..6245035-chr10:6341115..6343745,2	K562	blood:
2	chr10:6240895..6249179-chr10:6337425..6345825,48	MCF-7	breast:
3	chr10:6341160..6345288-chr10:6356730..6359741,4	MCF-7	breast:
4	chr10:6242967..6247217-chr10:6336875..6343685,22	MCF-7	breast:
5	chr10:6338687..6345306-chr10:6353335..6358938,10	MCF-7	breast:
6	chr10:6316454..6323166-chr10:6337458..6343783,14	MCF-7	breast:
7	chr10:6339849..6343647-chr10:6369137..6372590,4	MCF-7	breast:
8	chr10:6338433..6344348-chr10:6402915..6408706,10	MCF-7	breast:
9	chr10:6342449..6344753-chr10:6350540..6352238,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000215244	Chromatin interaction
ENSG00000170525	Chromatin interaction
ENSG00000213994	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1054044	chr10:6155144-6487217	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv1041039	chr10:6217724-6354858	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv894836	chr10:6246678-6435374	Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv430123	chr10:6309402-6448384	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv430125	chr10:6322167-6477267	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv971867	chr10:6341441-6353045	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
8	nsv528919	chr10:6343315-6352975	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6338400-6344000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr10:6338600-6343800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr10:6338800-6343800	Enhancers	Stomach Mucosa	stomach
4	chr10:6338800-6345000	Enhancers	Fetal Intestine Small	intestine
5	chr10:6339000-6343800	Enhancers	Lung	lung
6	chr10:6339200-6345200	Enhancers	Fetal Intestine Large	intestine
7	chr10:6339600-6343800	Enhancers	Primary B cells from peripheral blood	blood
8	chr10:6339600-6346400	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr10:6340200-6349000	Weak transcription	Adipose Nuclei	Adipose
10	chr10:6341800-6343800	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr10:6341800-6344200	Enhancers	A549	lung
12	chr10:6342000-6343800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr10:6342000-6343800	Enhancers	Fetal Lung	lung
14	chr10:6342200-6344800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr10:6342600-6343800	Weak transcription	NHEK	skin
16	chr10:6342600-6349000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr10:6342800-6343800	Enhancers	Pancreas	Pancrea
18	chr10:6342800-6353200	Weak transcription	Aorta	Aorta
19	chr10:6342800-6356600	Weak transcription	Brain Substantia Nigra	brain
20	chr10:6343000-6343600	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr10:6343000-6343600	Weak transcription	Gastric	stomach
22	chr10:6343000-6343600	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr10:6343000-6343800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr10:6343000-6346200	Weak transcription	Small Intestine	intestine
25	chr10:6343000-6348400	Enhancers	Primary B cells from cord blood	blood
26	chr10:6343200-6346400	Enhancers	Monocytes-CD14+_RO01746	blood
27	chr10:6343200-6347600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr10:6343200-6348000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr10:6343400-6343600	Enhancers	Rectal Mucosa Donor 29	rectum
30	chr10:6343400-6343800	Flanking Active TSS	Duodenum Mucosa	Duodenum
31	chr10:6343400-6343800	Enhancers	Fetal Kidney	kidney
32	chr10:6343400-6343800	Enhancers	Placenta Amnion	Placenta Amnion
33	chr10:6343400-6343800	Enhancers	GM12878-XiMat	blood

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