Variant report

Variant	rs2146915
Chromosome Location	chr14:25424736-25424737
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:25422906..25425550-chr14:25438493..25441061,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12893349	0.86[CEU][hapmap];0.89[CHB][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2057500	0.89[CHB][hapmap]
rs2332460	0.86[CEU][hapmap];0.95[CHB][hapmap];0.84[GIH][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28466581	0.87[AMR][1000 genomes]
rs4981565	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4983036	0.84[CHB][hapmap]
rs4983039	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7157671	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9671254	0.95[CHB][hapmap];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv901508	chr14:25365505-25451903	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1041051	chr14:25388230-25480511	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1047792	chr14:25388933-25503799	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv901509	chr14:25398571-25743484	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25412600-25426600	Weak transcription	Fetal Intestine Small	intestine
2	chr14:25412600-25426800	Weak transcription	Fetal Intestine Large	intestine
3	chr14:25422000-25428400	Weak transcription	Small Intestine	intestine
4	chr14:25422200-25426400	Enhancers	Left Ventricle	heart
5	chr14:25422200-25427200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr14:25422400-25425000	Enhancers	Right Ventricle	heart
7	chr14:25422600-25426000	Weak transcription	HSMM	muscle
8	chr14:25422600-25426800	Enhancers	GM12878-XiMat	blood
9	chr14:25422600-25428400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr14:25422600-25428400	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr14:25422600-25434000	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr14:25422800-25426200	Weak transcription	Aorta	Aorta
13	chr14:25422800-25428400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr14:25423000-25427400	Enhancers	Fetal Heart	heart
15	chr14:25423200-25424800	Enhancers	Stomach Smooth Muscle	stomach
16	chr14:25423200-25425200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr14:25423200-25425200	Enhancers	Lung	lung
18	chr14:25423200-25426200	Enhancers	Fetal Muscle Leg	muscle
19	chr14:25423400-25425000	Weak transcription	HSMMtube	muscle
20	chr14:25423400-25426000	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr14:25423400-25426800	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr14:25423400-25428000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr14:25423400-25428400	Weak transcription	Adipose Nuclei	Adipose
24	chr14:25423600-25425000	Enhancers	Right Atrium	heart
25	chr14:25423600-25426200	Weak transcription	Brain Anterior Caudate	brain
26	chr14:25423600-25427600	Weak transcription	Brain Substantia Nigra	brain
27	chr14:25423600-25429200	Weak transcription	Placenta	Placenta
28	chr14:25423800-25425200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr14:25423800-25427400	Weak transcription	Brain Cingulate Gyrus	brain
30	chr14:25423800-25428200	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr14:25424000-25426800	Weak transcription	Colon Smooth Muscle	Colon
32	chr14:25424200-25426600	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr14:25424200-25428000	Weak transcription	Fetal Kidney	kidney
34	chr14:25424200-25428200	Weak transcription	Fetal Lung	lung
35	chr14:25424200-25428600	Weak transcription	HepG2	liver
36	chr14:25424400-25424800	Enhancers	Gastric	stomach
37	chr14:25424400-25425000	Enhancers	Pancreas	Pancrea
38	chr14:25424400-25425800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr14:25424400-25426600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr14:25424600-25424800	Enhancers	Stomach Mucosa	stomach
41	chr14:25424600-25427400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr14:25424600-25428000	Weak transcription	Brain Angular Gyrus	brain
43	chr14:25424600-25428000	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr14:25424600-25428400	Weak transcription	Brain Hippocampus Middle	brain
45	chr14:25424600-25460600	Weak transcription	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links