Variant report

Variant	rs2148062
Chromosome Location	chr13:95651108-95651109
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs9524738	1.00[AFR][1000 genomes]
rs9524739	1.00[AFR][1000 genomes]
rs9561756	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832688	chr13:95633193-95780198	Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95646600-95654400	Weak transcription	Osteobl	bone
2	chr13:95649200-95655600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:95650400-95651200	Enhancers	H1 Cell Line	embryonic stem cell
4	chr13:95650600-95651200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr13:95650600-95654200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr13:95650600-95654600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr13:95650800-95655400	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr13:95650800-95655400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr13:95651000-95654400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr13:95651000-95654400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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