Variant report

Variant	rs2148419
Chromosome Location	chr13:39658456-39658457
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1012243	1.00[ASN][1000 genomes]
rs1043348	0.89[ASN][1000 genomes]
rs11147746	1.00[ASN][1000 genomes]
rs12427448	1.00[ASN][1000 genomes]
rs12428949	0.96[ASN][1000 genomes]
rs12584883	0.96[ASN][1000 genomes]
rs12585367	0.89[ASN][1000 genomes]
rs17059019	0.89[ASN][1000 genomes]
rs17826235	1.00[ASN][1000 genomes]
rs2094249	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3751375	0.89[ASN][1000 genomes]
rs60968029	0.89[ASN][1000 genomes]
rs61737582	0.89[ASN][1000 genomes]
rs73456199	0.89[ASN][1000 genomes]
rs943233	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1035255	chr13:39618302-39715336	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39658400-39660600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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