Variant report

Variant	rs2149457
Chromosome Location	chr6:70086019-70086020
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1283465	0.95[CEU][hapmap]
rs1283467	0.95[CEU][hapmap];0.89[YRI][hapmap]
rs1283470	0.95[CEU][hapmap];0.90[YRI][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1290329	0.81[ASW][hapmap];0.95[CEU][hapmap];0.88[GIH][hapmap];0.84[LWK][hapmap];0.90[MEX][hapmap];0.82[MKK][hapmap];0.92[TSI][hapmap];0.90[YRI][hapmap]
rs1328735	0.87[ASW][hapmap];0.97[CHD][hapmap];0.85[ASN][1000 genomes]
rs1952435	0.94[ASW][hapmap];0.82[CEU][hapmap];0.88[GIH][hapmap];0.95[LWK][hapmap];0.86[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs3799091	0.95[CEU][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3799095	0.94[CHD][hapmap];0.83[ASN][1000 genomes]
rs7744063	0.95[CEU][hapmap]
rs7745125	0.87[ASW][hapmap];1.00[CEU][hapmap];0.85[CHB][hapmap];0.94[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.91[MEX][hapmap];0.84[MKK][hapmap];0.95[TSI][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7749882	0.81[ASW][hapmap];0.95[CEU][hapmap];0.91[GIH][hapmap];0.84[LWK][hapmap];0.91[MEX][hapmap];0.82[MKK][hapmap];0.95[TSI][hapmap];0.90[YRI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7755689	0.87[EUR][1000 genomes]
rs913537	0.87[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs913543	0.81[ASW][hapmap]
rs9454732	0.81[ASW][hapmap];0.95[CEU][hapmap];0.88[GIH][hapmap];0.84[LWK][hapmap];0.85[MEX][hapmap];0.82[MKK][hapmap];0.92[TSI][hapmap];0.90[YRI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv432919	chr6:69873179-70221322	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv463149	chr6:70007450-70097588	Weak transcription Strong transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv603635	chr6:70007450-70097588	Weak transcription Enhancers Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70054600-70098600	Weak transcription	Brain Anterior Caudate	brain
2	chr6:70054600-70100600	Weak transcription	Brain Angular Gyrus	brain
3	chr6:70081000-70086800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr6:70081000-70108000	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr6:70081200-70094200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:70081200-70095200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:70082200-70098600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr6:70083600-70093800	Weak transcription	Brain Germinal Matrix	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links