Variant report

Variant	rs2149875
Chromosome Location	chr9:18500949-18500950
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1006022	0.96[CEU][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10217409	0.92[ASN][1000 genomes]
rs10217753	0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10453192	0.86[EUR][1000 genomes]
rs10733354	0.84[EUR][1000 genomes]
rs10738511	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10810973	0.89[EUR][1000 genomes]
rs10810974	0.91[JPT][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs11793923	0.93[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12339807	0.84[ASN][1000 genomes]
rs12340914	0.84[ASN][1000 genomes]
rs1281352	0.93[EUR][1000 genomes]
rs1329720	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs1340039	0.81[EUR][1000 genomes]
rs1417035	0.82[EUR][1000 genomes]
rs1417037	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs1538999	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16936779	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs1832638	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1888068	0.89[CEU][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1888069	0.93[CEU][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2153415	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2153416	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2277160	1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3898100	0.86[EUR][1000 genomes]
rs4246142	0.83[EUR][1000 genomes]
rs4246143	0.85[EUR][1000 genomes]
rs4590536	0.85[EUR][1000 genomes]
rs4961651	0.88[EUR][1000 genomes]
rs4961652	0.92[CEU][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4961653	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs4961654	1.00[JPT][hapmap]
rs6475219	0.84[EUR][1000 genomes]
rs6475220	0.92[CEU][hapmap];0.83[CHB][hapmap];0.82[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6475221	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7019399	0.93[CEU][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7032393	0.84[EUR][1000 genomes]
rs7036515	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.87[YRI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7046502	0.84[EUR][1000 genomes]
rs7856703	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7864622	0.91[CHB][hapmap];0.83[JPT][hapmap]
rs7864727	0.91[CHB][hapmap];0.83[JPT][hapmap]
rs7867766	0.92[CEU][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv525659	chr9:18288212-19009041	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1019127	chr9:18288271-18996288	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv892688	chr9:18385143-18551247	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1029449	chr9:18414752-18829127	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv540077	chr9:18414752-18829127	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
7	nsv1030931	chr9:18414752-18903530	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
8	nsv892689	chr9:18485434-18537444	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv892690	chr9:18485434-18592374	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18490400-18509400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:18493800-18502400	Weak transcription	Ovary	ovary
3	chr9:18494000-18501000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr9:18495400-18513200	Weak transcription	HUVEC	blood vessel
5	chr9:18496800-18507000	Weak transcription	NHLF	lung
6	chr9:18497000-18501000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr9:18497000-18501000	Enhancers	NHDF-Ad	bronchial
8	chr9:18497000-18502800	Enhancers	Fetal Lung	lung
9	chr9:18498000-18501200	Weak transcription	Fetal Stomach	stomach
10	chr9:18498200-18501800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr9:18499200-18504800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr9:18499400-18501800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr9:18499400-18501800	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr9:18499600-18501800	Enhancers	Fetal Heart	heart
15	chr9:18500000-18501000	Genic enhancers	HSMM	muscle
16	chr9:18500400-18501800	Weak transcription	Colon Smooth Muscle	Colon
17	chr9:18500400-18502000	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr9:18500600-18501400	Weak transcription	Osteobl	bone
19	chr9:18500600-18504800	Weak transcription	NH-A	brain
20	chr9:18500800-18506600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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