Variant report

Variant	rs2150509
Chromosome Location	chr14:56388941-56388942
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1107097	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17090687	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17090690	0.91[EUR][1000 genomes]
rs1952882	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2183628	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2342851	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4898878	0.92[ASN][1000 genomes]
rs7144669	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7146394	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7146594	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7149543	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs874656	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901966	chr14:56160904-56436203	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv901977	chr14:56213392-56492996	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv34106	chr14:56346245-56550642	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56373200-56392000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:56380800-56394400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:56387200-56395800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr14:56388000-56389200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr14:56388200-56389200	Enhancers	Fetal Thymus	thymus
6	chr14:56388200-56389600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr14:56388200-56389800	Enhancers	Pancreas	Pancrea
8	chr14:56388400-56389200	Enhancers	Gastric	stomach
9	chr14:56388400-56389200	Enhancers	Thymus	Thymus
10	chr14:56388600-56389000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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