Variant report

Variant	rs2151891
Chromosome Location	chr10:116160029-116160030
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10885558	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10885564	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1535388	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1575232	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4751864	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4752638	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4752729	0.86[EUR][1000 genomes]
rs6585276	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7088109	0.98[EUR][1000 genomes]
rs7906164	0.86[EUR][1000 genomes]
rs7910402	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7917021	0.86[EUR][1000 genomes]
rs941856	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116151800-116162600	Weak transcription	Lung	lung
2	chr10:116153200-116162600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:116154200-116161200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr10:116156200-116161000	Enhancers	Fetal Lung	lung
5	chr10:116156800-116162200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr10:116157400-116160800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
7	chr10:116157600-116160600	Enhancers	Duodenum Smooth Muscle	Duodenum
8	chr10:116157600-116161000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
9	chr10:116157600-116161000	Enhancers	Placenta	Placenta
10	chr10:116157600-116161000	Weak transcription	Right Atrium	heart
11	chr10:116157600-116161400	Enhancers	Ovary	ovary
12	chr10:116157800-116161800	Enhancers	HMEC	breast
13	chr10:116157800-116162600	Enhancers	Colon Smooth Muscle	Colon
14	chr10:116157800-116162600	Weak transcription	Esophagus	oesophagus
15	chr10:116158400-116160800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr10:116158800-116160400	Enhancers	Brain Anterior Caudate	brain
17	chr10:116158800-116162000	Enhancers	Fetal Muscle Leg	muscle
18	chr10:116158800-116162400	Enhancers	Fetal Stomach	stomach
19	chr10:116159000-116160200	Enhancers	Left Ventricle	heart
20	chr10:116159000-116161200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
21	chr10:116159000-116161400	Enhancers	NHDF-Ad	bronchial
22	chr10:116159000-116162600	Weak transcription	Right Ventricle	heart
23	chr10:116159000-116163000	Enhancers	HSMMtube	muscle
24	chr10:116159200-116160200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
25	chr10:116159200-116161000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr10:116159200-116161200	Weak transcription	Spleen	Spleen
27	chr10:116159200-116162200	Enhancers	Rectal Smooth Muscle	rectum
28	chr10:116159400-116160200	Bivalent Enhancer	Brain Inferior Temporal Lobe	brain
29	chr10:116159400-116160200	Flanking Active TSS	Stomach Smooth Muscle	stomach
30	chr10:116159400-116161200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr10:116159400-116162000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr10:116159600-116160200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr10:116159600-116160200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr10:116159600-116160200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr10:116159600-116160200	Bivalent Enhancer	Adipose Nuclei	Adipose
36	chr10:116159600-116160200	Enhancers	Stomach Mucosa	stomach
37	chr10:116159600-116160600	Bivalent Enhancer	Brain Hippocampus Middle	brain
38	chr10:116159600-116161000	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr10:116159600-116161000	Enhancers	NHEK	skin
40	chr10:116159600-116161200	Bivalent Enhancer	NHLF	lung
41	chr10:116159800-116160200	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr10:116159800-116160400	Enhancers	Fetal Muscle Trunk	muscle
43	chr10:116159800-116160400	Enhancers	GM12878-XiMat	blood
44	chr10:116159800-116161000	Weak transcription	Fetal Kidney	kidney
45	chr10:116159800-116162600	Weak transcription	Pancreas	Pancrea
46	chr10:116159800-116162600	Enhancers	A549	lung
47	chr10:116160000-116160200	Bivalent Enhancer	Brain Substantia Nigra	brain
48	chr10:116160000-116160400	Enhancers	HUES6 Cell Line	embryonic stem cell
49	chr10:116160000-116160400	Enhancers	Rectal Mucosa Donor 31	rectum
50	chr10:116160000-116161000	Weak transcription	HSMM	muscle

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