Variant report

Variant	rs2152187
Chromosome Location	chr20:16619876-16619877
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11696741	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11697238	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6044167	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6044179	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1002221	chr20:16615972-16620221	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16605600-16628800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr20:16615800-16620000	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr20:16618400-16620800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr20:16619400-16622400	Weak transcription	Fetal Kidney	kidney
5	chr20:16619600-16620000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr20:16619600-16620800	Enhancers	Fetal Intestine Small	intestine
7	chr20:16619800-16620600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr20:16619800-16620800	Enhancers	Fetal Intestine Large	intestine
9	chr20:16619800-16621600	Enhancers	Sigmoid Colon	Sigmoid Colon

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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