Variant report

Variant	rs2152304
Chromosome Location	chr10:26681299-26681300
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11015086	0.89[EUR][1000 genomes]
rs12412360	0.89[EUR][1000 genomes]
rs17753166	0.89[EUR][1000 genomes]
rs2152305	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4423099	0.81[EUR][1000 genomes]
rs4749122	0.95[EUR][1000 genomes]
rs7905228	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs945293	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv1043832	chr10:26669040-26809400	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2760104	chr10:26679548-26693124	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26680400-26681400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
2	chr10:26680400-26681400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
3	chr10:26680400-26681400	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus
4	chr10:26680400-26681400	Active TSS	Thymus	Thymus
5	chr10:26680400-26681600	Active TSS	Primary T cells from cord blood	blood
6	chr10:26680400-26681800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
7	chr10:26680600-26681400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
8	chr10:26680600-26681400	Flanking Active TSS	Primary hematopoietic stem cells	blood
9	chr10:26680600-26681400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr10:26680600-26681600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr10:26680600-26681600	Enhancers	GM12878-XiMat	blood
12	chr10:26680800-26681400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
13	chr10:26680800-26681400	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
14	chr10:26680800-26681400	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
15	chr10:26680800-26681400	Flanking Bivalent TSS/Enh	Primary mononuclear cells fromperipheralblood	Blood
16	chr10:26680800-26681400	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
17	chr10:26680800-26681400	Bivalent/Poised TSS	Colonic Mucosa	Colon
18	chr10:26680800-26681600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
19	chr10:26680800-26681600	Flanking Active TSS	Primary B cells from cord blood	blood
20	chr10:26680800-26681800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
21	chr10:26681000-26681400	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr10:26681000-26681400	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
23	chr10:26681000-26681400	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
24	chr10:26681000-26681400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
25	chr10:26681000-26681400	Bivalent Enhancer	Adipose Nuclei	Adipose
26	chr10:26681000-26681400	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
27	chr10:26681000-26681400	Bivalent Enhancer	Placenta	Placenta
28	chr10:26681000-26681800	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
29	chr10:26681200-26681400	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
30	chr10:26681200-26681400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
31	chr10:26681200-26681400	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr10:26681200-26681400	Flanking Active TSS	Primary B cells from peripheral blood	blood
33	chr10:26681200-26681400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
34	chr10:26681200-26681400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
35	chr10:26681200-26681400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
36	chr10:26681200-26681400	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
37	chr10:26681200-26681400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
38	chr10:26681200-26681600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr10:26681200-26681600	Enhancers	Spleen	Spleen

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