Variant report

Variant	rs2153346
Chromosome Location	chr10:94788460-94788461
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94786714..94788563-chr10:94813570..94815319,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12413181	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7089188	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs835273	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv522103	chr10:94660133-94810665	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv551942	chr10:94695617-94810665	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94713200-94819400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:94750000-94790200	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr10:94750800-94794600	Weak transcription	Small Intestine	intestine
4	chr10:94762200-94791400	Weak transcription	Placenta	Placenta
5	chr10:94766200-94790000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr10:94770200-94788600	Weak transcription	K562	blood
7	chr10:94772600-94791800	Weak transcription	Duodenum Mucosa	Duodenum
8	chr10:94773400-94800000	Weak transcription	Lung	lung
9	chr10:94775200-94791400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr10:94775400-94812800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr10:94777400-94788800	Weak transcription	HSMMtube	muscle
12	chr10:94779800-94789800	Weak transcription	Ovary	ovary
13	chr10:94780600-94801400	Weak transcription	Brain Anterior Caudate	brain
14	chr10:94781400-94807600	Weak transcription	Psoas Muscle	Psoas
15	chr10:94783000-94790000	Weak transcription	Rectal Smooth Muscle	rectum
16	chr10:94783200-94789000	Weak transcription	Fetal Thymus	thymus
17	chr10:94783200-94793400	Weak transcription	Fetal Heart	heart
18	chr10:94783200-94794000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr10:94783400-94791800	Weak transcription	Liver	Liver
20	chr10:94783400-94802800	Weak transcription	Stomach Smooth Muscle	stomach
21	chr10:94785200-94819000	Weak transcription	Thymus	Thymus
22	chr10:94786000-94790000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr10:94786200-94788600	Weak transcription	A549	lung
24	chr10:94786200-94793200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr10:94786200-94799200	Weak transcription	Primary B cells from peripheral blood	blood
26	chr10:94786400-94792000	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr10:94786400-94809200	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr10:94787000-94792400	Weak transcription	Fetal Intestine Large	intestine
29	chr10:94787200-94817600	Weak transcription	Dnd41	blood
30	chr10:94787400-94789800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr10:94787400-94799400	Weak transcription	Primary T cells from cord blood	blood
32	chr10:94787600-94788800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr10:94787600-94799400	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr10:94787800-94791000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr10:94787800-94792600	Weak transcription	Brain Germinal Matrix	brain
36	chr10:94787800-94793000	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr10:94787800-94799200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr10:94787800-94802000	Weak transcription	Primary B cells from cord blood	blood
39	chr10:94787800-94814000	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr10:94788000-94792600	Weak transcription	Fetal Intestine Small	intestine
41	chr10:94788000-94793000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr10:94788000-94799400	Weak transcription	Primary hematopoietic stem cells	blood
43	chr10:94788000-94819000	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr10:94788000-94819400	Weak transcription	Left Ventricle	heart
45	chr10:94788200-94790000	Weak transcription	HUVEC	blood vessel
46	chr10:94788200-94791000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr10:94788200-94792000	Weak transcription	Fetal Muscle Trunk	muscle
48	chr10:94788200-94799200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr10:94788400-94791200	Enhancers	Muscle Satellite Cultured Cells	--
50	chr10:94788400-94803400	Weak transcription	Monocytes-CD14+_RO01746	blood

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