Variant report

Variant	rs215365
Chromosome Location	chr12:47741008-47741009
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs215367	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs215369	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs215378	0.81[ASN][1000 genomes]
rs215379	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs215380	0.81[ASN][1000 genomes]
rs215381	0.81[ASN][1000 genomes]
rs215384	0.81[ASN][1000 genomes]
rs215397	0.87[ASN][1000 genomes]
rs58616	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751100	chr12:47541390-47746157	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv558785	chr12:47740440-48044011	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:47723200-47742200	Weak transcription	Primary T cells from cord blood	blood
2	chr12:47737400-47748400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr12:47737600-47741600	Enhancers	Liver	Liver
4	chr12:47740000-47741200	Enhancers	HepG2	liver
5	chr12:47740200-47742400	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr12:47740800-47742400	Weak transcription	Primary B cells from peripheral blood	blood
7	chr12:47740800-47742400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr12:47740800-47743000	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr12:47740800-47743200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr12:47740800-47743400	Weak transcription	Osteobl	bone
11	chr12:47741000-47742000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr12:47741000-47742200	Weak transcription	A549	lung
13	chr12:47741000-47742400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr12:47741000-47743000	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr12:47741000-47743600	Weak transcription	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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