Variant report

Variant	rs2153778
Chromosome Location	chr10:92606810-92606811
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:92605355..92608309-chr10:92609468..92612446,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12412849	1.00[AMR][1000 genomes]
rs12415829	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948363	chr10:92084520-92614402	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92597800-92616200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:92599400-92607200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:92605600-92607800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr10:92605600-92610000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr10:92605800-92609400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:92606000-92607400	Enhancers	HSMMtube	muscle
7	chr10:92606200-92607000	Enhancers	HMEC	breast
8	chr10:92606200-92607200	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr10:92606200-92607600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr10:92606200-92607600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr10:92606200-92607600	Enhancers	Osteobl	bone
12	chr10:92606200-92608200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr10:92606200-92609200	Enhancers	NHEK	skin
14	chr10:92606400-92607400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr10:92606400-92607400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr10:92606400-92607600	Enhancers	NH-A	brain
17	chr10:92606400-92608200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr10:92606600-92607200	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr10:92606800-92607000	Enhancers	Muscle Satellite Cultured Cells	--
20	chr10:92606800-92607200	Enhancers	Pancreatic Islets	Pancreatic Islet
21	chr10:92606800-92607600	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr10:92606800-92607600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr10:92606800-92609200	Weak transcription	HSMM	muscle
24	chr10:92606800-92609600	Weak transcription	Psoas Muscle	Psoas

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