Variant report

Variant	rs2153890
Chromosome Location	chr6:78050014-78050015
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1935739	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7740912	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7771062	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9341658	0.80[AFR][1000 genomes]
rs9343600	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017082	chr6:77585310-78258237	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv534282	chr6:77764575-78351994	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1034979	chr6:77781244-78426249	Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv538324	chr6:77781244-78426249	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2753543	chr6:77791848-78059351	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1015307	chr6:77902559-78352291	Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1024795	chr6:78028751-78076926	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv1018131	chr6:78031037-78076926	Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv1015358	chr6:78033996-78066871	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:78044000-78051200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:78044200-78051200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:78044200-78078200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:78044400-78051000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:78044400-78051200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:78045400-78050200	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr6:78045600-78050200	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr6:78047800-78051000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:78048400-78071600	Weak transcription	NHEK	skin
10	chr6:78049400-78050400	Flanking Active TSS	Fetal Heart	heart
11	chr6:78049400-78050400	Enhancers	Left Ventricle	heart
12	chr6:78049400-78051800	Enhancers	HUVEC	blood vessel
13	chr6:78049600-78050400	Enhancers	Right Ventricle	heart
14	chr6:78049600-78051600	Enhancers	Right Atrium	heart
15	chr6:78049600-78051800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr6:78049800-78051000	Enhancers	Hela-S3	cervix
17	chr6:78049800-78051600	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr6:78050000-78050800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr6:78050000-78051600	Enhancers	Duodenum Mucosa	Duodenum
20	chr6:78050000-78051600	Enhancers	Pancreas	Pancrea

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