Variant report

Variant	rs2154399
Chromosome Location	chr10:44667721-44667722
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs4948825	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1043342	chr10:44650635-44682716	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44656600-44669400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:44656600-44673200	Weak transcription	Right Atrium	heart
3	chr10:44658000-44668400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:44660400-44668200	Weak transcription	Left Ventricle	heart
5	chr10:44664200-44669000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:44664600-44667800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr10:44666000-44668200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr10:44666200-44668200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr10:44666400-44667800	Weak transcription	HepG2	liver
10	chr10:44666400-44669800	Enhancers	Pancreas	Pancrea
11	chr10:44667000-44670600	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr10:44667400-44669800	Enhancers	Placenta Amnion	Placenta Amnion
13	chr10:44667400-44670000	Enhancers	Fetal Heart	heart
14	chr10:44667400-44671400	Weak transcription	Right Ventricle	heart
15	chr10:44667400-44675800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr10:44667600-44669800	Enhancers	Stomach Mucosa	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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