Variant report

Variant	rs2155439
Chromosome Location	chr11:108443959-108443960
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10466558	0.81[ASN][1000 genomes]
rs1072877	0.90[CHB][hapmap]
rs1074014	0.96[CEU][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10890867	0.83[EUR][1000 genomes]
rs10890868	0.82[EUR][1000 genomes]
rs11212716	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11212728	0.87[EUR][1000 genomes]
rs12276845	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2101141	0.94[EUR][1000 genomes]
rs2640742	0.81[ASN][1000 genomes]
rs2640745	0.81[ASN][1000 genomes]
rs2846418	0.85[CEU][hapmap];0.81[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs2846420	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35771441	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61913927	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61913929	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7105022	0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898386	chr11:108409442-108831875	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv898387	chr11:108440814-108535792	Flanking Active TSS Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv898388	chr11:108440814-108724639	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108433000-108444000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:108434600-108462400	Weak transcription	Gastric	stomach
3	chr11:108442200-108447400	Weak transcription	Stomach Mucosa	stomach
4	chr11:108442800-108446000	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr11:108443200-108444000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr11:108443200-108445200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr11:108443200-108446200	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr11:108443800-108444000	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr11:108443800-108447400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr11:108443800-108447400	Weak transcription	NHEK	skin
11	chr11:108443800-108459600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr11:108443800-108459800	Weak transcription	Placenta	Placenta
13	chr11:108443800-108461600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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