Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10236882	0.86[ASN][1000 genomes]
rs10238262	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10238455	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10238553	0.80[AMR][1000 genomes]
rs10247976	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10252319	0.86[ASN][1000 genomes]
rs10254589	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10273276	0.83[ASN][1000 genomes]
rs12534710	0.83[ASN][1000 genomes]
rs13235478	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13241308	0.91[ASN][1000 genomes]
rs1513918	0.90[ASN][1000 genomes]
rs1849639	0.91[ASN][1000 genomes]
rs1913409	0.86[ASN][1000 genomes]
rs2189046	0.83[ASN][1000 genomes]
rs2396044	0.83[ASN][1000 genomes]
rs2894523	0.83[ASN][1000 genomes]
rs4727719	0.85[ASN][1000 genomes]
rs4727720	0.83[ASN][1000 genomes]
rs4730344	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4730352	0.81[ASN][1000 genomes]
rs6942914	0.83[ASN][1000 genomes]
rs6949987	0.88[ASN][1000 genomes]
rs6951182	0.88[ASN][1000 genomes]
rs757151	0.83[ASN][1000 genomes]
rs769306	0.83[ASN][1000 genomes]
rs7795429	0.83[ASN][1000 genomes]
rs7808828	0.88[ASN][1000 genomes]
rs9640718	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs978678	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817371	chr7:108199882-108649799	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1031096	chr7:108334543-108596014	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108535000-108540600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr7:108535200-108540600	Weak transcription	HUES48 Cell Line	embryonic stem cell

Quick Search: