Variant report

Variant	rs2158735
Chromosome Location	chr7:70601065-70601066
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10245174	0.91[EUR][1000 genomes]
rs11762382	0.92[JPT][hapmap];0.88[ASN][1000 genomes]
rs11973703	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12699002	0.88[ASN][1000 genomes]
rs1525289	0.86[EUR][1000 genomes]
rs1608803	0.86[EUR][1000 genomes]
rs2057943	0.90[EUR][1000 genomes]
rs2079406	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28485392	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34353746	0.92[EUR][1000 genomes]
rs6957446	0.93[EUR][1000 genomes]
rs73186636	0.92[EUR][1000 genomes]
rs7798323	0.86[EUR][1000 genomes]
rs7803653	0.86[ASN][1000 genomes]
rs7804727	0.86[ASN][1000 genomes]
rs880498	0.86[EUR][1000 genomes]
rs9885999	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1034662	chr7:70275712-70722953	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70598600-70611200	Weak transcription	Right Atrium	heart
2	chr7:70598800-70605000	Weak transcription	Aorta	Aorta
3	chr7:70598800-70611200	Weak transcription	Colon Smooth Muscle	Colon
4	chr7:70599000-70611000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:70599200-70601200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
6	chr7:70599400-70601400	Bivalent Enhancer	Fetal Muscle Leg	muscle
7	chr7:70599400-70605000	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr7:70599400-70605400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr7:70599600-70601400	Enhancers	H9 Cell Line	embryonic stem cell
10	chr7:70599600-70605000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr7:70599600-70605200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr7:70599600-70609400	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr7:70599600-70611400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr7:70599800-70601200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr7:70599800-70605000	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr7:70600200-70601200	Enhancers	H1 Cell Line	embryonic stem cell
17	chr7:70600200-70601200	Enhancers	Ovary	ovary
18	chr7:70600400-70601200	Enhancers	Right Ventricle	heart
19	chr7:70600400-70601400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr7:70600400-70601400	Enhancers	Pancreas	Pancrea
21	chr7:70600400-70601600	Enhancers	Left Ventricle	heart
22	chr7:70600400-70601800	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr7:70600600-70601200	Enhancers	Fetal Brain Female	brain
24	chr7:70600800-70601400	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr7:70601000-70601200	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr7:70601000-70601400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr7:70601000-70601400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
28	chr7:70601000-70602600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr7:70601000-70604200	Weak transcription	Spleen	Spleen
30	chr7:70601000-70605000	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr7:70601000-70613600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links