Variant report

Variant	rs2159453
Chromosome Location	chr17:59838206-59838207
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:59836631..59839158-chr20:46129885..46132592,2	MCF-7	breast:
2	chr17:59787823..59789456-chr17:59835997..59838639,2	MCF-7	breast:
3	chr17:59836631..59838652-chr17:59937979..59939487,2	K562	blood:
4	chr17:59836843..59839054-chr2:131690423..131691942,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136492	Chromatin interaction
ENSG00000124151	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2024189	0.91[AFR][1000 genomes]
rs2109253	0.91[AFR][1000 genomes]
rs2378901	0.81[AFR][1000 genomes]
rs2378903	0.83[AFR][1000 genomes]
rs2378904	0.87[AFR][1000 genomes]
rs4968449	0.91[AFR][1000 genomes]
rs7208535	0.91[AFR][1000 genomes]
rs7215102	0.87[AFR][1000 genomes]
rs7223095	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378293	chr17:59744117-60124899	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
2	nsv908673	chr17:59767501-59926645	Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	94 gene(s)	inside rSNPs	diseases
3	nsv908674	chr17:59800827-59899790	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
4	nsv575841	chr17:59812748-59914681	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
5	nsv575842	chr17:59812748-59927307	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	70 gene(s)	inside rSNPs	diseases
6	nsv908675	chr17:59835864-59937286	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:59794400-59848200	Weak transcription	HUVEC	blood vessel
2	chr17:59804200-59847400	Weak transcription	K562	blood
3	chr17:59807600-59838400	Weak transcription	Fetal Stomach	stomach
4	chr17:59814000-59849000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr17:59815000-59839200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr17:59815600-59844200	Weak transcription	HMEC	breast
7	chr17:59815800-59843400	Weak transcription	NHEK	skin
8	chr17:59816800-59887800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr17:59819000-59842600	Weak transcription	Fetal Muscle Trunk	muscle
10	chr17:59819400-59843600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr17:59819400-59848200	Weak transcription	Primary B cells from cord blood	blood
12	chr17:59820000-59839200	Weak transcription	Fetal Muscle Leg	muscle
13	chr17:59820000-59841400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr17:59820000-59841400	Weak transcription	Ovary	ovary
15	chr17:59820000-59846600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr17:59820400-59840200	Weak transcription	Fetal Thymus	thymus
17	chr17:59820400-59877200	Weak transcription	NH-A	brain
18	chr17:59824400-59839200	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr17:59825000-59840000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr17:59825800-59838600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr17:59825800-59846000	Weak transcription	Fetal Intestine Small	intestine
22	chr17:59825800-59898400	Weak transcription	Thymus	Thymus
23	chr17:59826000-59839400	Weak transcription	Fetal Lung	lung
24	chr17:59826000-59841400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr17:59826200-59839600	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr17:59827000-59839600	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr17:59827400-59847400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr17:59827600-59839200	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr17:59827600-59839200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr17:59828200-59840200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr17:59830200-59843400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr17:59830600-59839600	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr17:59832000-59846200	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr17:59832200-59848400	Weak transcription	HepG2	liver
35	chr17:59833400-59839400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr17:59833600-59839200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr17:59834400-59843200	Weak transcription	Osteobl	bone
38	chr17:59835400-59839000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr17:59835400-59845800	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr17:59835600-59839000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr17:59835800-59848400	Weak transcription	Hela-S3	cervix
42	chr17:59836000-59839200	Weak transcription	A549	lung
43	chr17:59836000-59839600	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr17:59836000-59843200	Weak transcription	NHLF	lung
45	chr17:59836200-59839400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr17:59836400-59841800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr17:59837200-59838400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr17:59837600-59839000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr17:59838000-59841800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr17:59838000-59843800	Strong transcription	Dnd41	blood

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