Variant report
| Variant | rs2159587 |
|---|---|
| Chromosome Location | chr12:42331762-42331763 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs10459289 | 0.94[ASN][1000 genomes] |
| rs10880193 | 1.00[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs10880195 | 0.98[ASN][1000 genomes] |
| rs10880201 | 0.99[ASN][1000 genomes] |
| rs10880202 | 0.99[ASN][1000 genomes] |
| rs10880203 | 0.99[ASN][1000 genomes] |
| rs10880204 | 0.99[ASN][1000 genomes] |
| rs10880205 | 0.99[ASN][1000 genomes] |
| rs10880206 | 0.99[ASN][1000 genomes] |
| rs10880207 | 0.99[ASN][1000 genomes] |
| rs10880208 | 0.99[ASN][1000 genomes] |
| rs10880209 | 0.99[ASN][1000 genomes] |
| rs10880210 | 0.99[ASN][1000 genomes] |
| rs10880211 | 0.99[ASN][1000 genomes] |
| rs11181226 | 0.93[ASN][1000 genomes] |
| rs11181249 | 1.00[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11181253 | 1.00[AMR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11181258 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11181260 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11181263 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11181266 | 0.99[ASN][1000 genomes] |
| rs11181267 | 0.99[ASN][1000 genomes] |
| rs11181268 | 0.99[ASN][1000 genomes] |
| rs11181270 | 0.99[ASN][1000 genomes] |
| rs11181271 | 1.00[AMR][1000 genomes] |
| rs12228308 | 0.93[ASN][1000 genomes] |
| rs12301500 | 1.00[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs12306858 | 1.00[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs12313177 | 1.00[AMR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1541491 | 1.00[AMR][1000 genomes] |
| rs1541492 | 1.00[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2109533 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2109534 | 0.90[AFR][1000 genomes] |
| rs2191514 | 0.81[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs28540140 | 0.93[ASN][1000 genomes] |
| rs59711995 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv430505 | chr12:42297931-42720773 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 38 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:42326800-42333800 | Weak transcription | Foreskin Melanocyte Primary Cells skin01 | Skin |
| 2 | chr12:42328000-42336000 | Weak transcription | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
